RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 DHX16O60231 1041 aaKnown RBP11.96□□□□□ -0.49
LDLR-214ENST00000560628 ZEB2O60315 1214 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 TIMP1P01033 207 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 CHMLP26374 656 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 PSMC6P62333 389 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 PTH1RQ03431 593 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 FPGSQ05932 587 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 PDE4DQ08499 809 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 CDC37Q16543 378 aaPredicted RBP11.96□□□□□ -0.49
LDLR-214ENST00000560628 CYB5R4Q7L1T6 521 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 SLC17A8Q8NDX2 589 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 CNNM2Q9H8M5 875 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 TBX21Q9UL17 535 aa11.96□□□□□ -0.49
LDLR-214ENST00000560628 LAMA3Q16787 3333 aa11.96□□□□□ -0.5
LDLR-214ENST00000560628 GRIN2DO15399 1336 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 MROH7Q68CQ1 1323 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 WDR19Q8NEZ3 1342 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 TLR3O15455 904 aaKnown RBP11.95□□□□□ -0.5
LDLR-214ENST00000560628 PARP1P09874 1014 aaKnown RBP11.95□□□□□ -0.5
LDLR-214ENST00000560628 NT5C2P49902 561 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 ITGA7Q13683 1181 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 DUSP28Q4G0W2 176 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 ASPRV1Q53RT3 343 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 IFIT1BQ5T764 474 aaKnown RBP11.95□□□□□ -0.5
LDLR-214ENST00000560628 FAM126BQ8IXS8 530 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 STAG2Q8N3U4 1231 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 RUFY2Q8WXA3 655 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 RNPC3Q96LT9 517 aaKnown RBP11.95□□□□□ -0.5
LDLR-214ENST00000560628 PPP1R12CQ9BZL4 782 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 Q9Y3F1 56 aa11.95□□□□□ -0.5
LDLR-214ENST00000560628 CABYRO75952 493 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 MYL3P08590 195 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 CYP2C18P33260 490 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 SEC23AQ15436 765 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 QRICH1Q2TAL8 776 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 FAM109BQ6ICB4 259 aaPredicted RBP11.94□□□□□ -0.5
LDLR-214ENST00000560628 MFSD5Q6N075 450 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 SLC43A3Q8NBI5 491 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 COPS5Q92905 334 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 TAAR1Q96RJ0 339 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 TRPV6Q9H1D0 765 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 JMJD4Q9H9V9 463 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 STXBP5LQ9Y2K9 1186 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 TAF6LQ9Y6J9 622 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 LTBP2Q14767 1821 aa11.94□□□□□ -0.5
LDLR-214ENST00000560628 RBM47A0AV96 593 aaKnown RBP11.93□□□□□ -0.5
LDLR-214ENST00000560628 CD4P01730 458 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 CYP21A2P08686 494 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 ACRP10323 421 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 CSF2RAP15509 400 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 TRDNQ13061 729 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 ZNF697Q5TEC3 545 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 C16orf59Q7L2K0 433 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 CHST3Q7LGC8 479 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 FBXO11Q86XK2 927 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 RGS22Q8NE09 1264 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 DNERQ8NFT8 737 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 OR6J1Q8NGC5 347 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 SYTL5Q8TDW5 730 aaPredicted RBP11.93□□□□□ -0.5
LDLR-214ENST00000560628 PPP1R13LQ8WUF5 828 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 GUCD1Q96NT3 240 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 MPHOSPH6Q99547 160 aaKnown RBP11.93□□□□□ -0.5
LDLR-214ENST00000560628 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.93□□□□□ -0.55e-14■□□□□ 9.7
LDLR-214ENST00000560628 SEMA6BQ9H3T3 888 aa11.93□□□□□ -0.5
LDLR-214ENST00000560628 U3KPZ7 1027 aaPredicted RBP11.93□□□□□ -0.5
LDLR-214ENST00000560628 ABCB11O95342 1321 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 RAD50Q92878 1312 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 LOC102724159A0A0B4J2E5 919 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 B4DLN1 442 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 KLRF2D3W0D1 207 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 IFIT3O14879 490 aaKnown RBP11.92□□□□□ -0.5
LDLR-214ENST00000560628 TXNP10599 105 aaKnown RBP11.92□□□□□ -0.5
LDLR-214ENST00000560628 EDNRBP24530 442 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 MRPL12P52815 198 aaKnown RBP11.92□□□□□ -0.5
LDLR-214ENST00000560628 SMAD3P84022 425 aaKnown RBP11.92□□□□□ -0.5
LDLR-214ENST00000560628 PPIGQ13427 754 aaKnown RBP eCLIP11.92□□□□□ -0.53e-7■■□□□ 11.9
LDLR-214ENST00000560628 PPP2R5BQ15173 497 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 PWP2Q15269 919 aaKnown RBP11.92□□□□□ -0.5
LDLR-214ENST00000560628 TMEM240Q5SV17 173 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 TMEM199Q8N511 208 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 SENP2Q9HC62 589 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 GPHNQ9NQX3 736 aaPredicted RBP11.92□□□□□ -0.5
LDLR-214ENST00000560628 COL20A1Q9P218 1284 aa11.92□□□□□ -0.5
LDLR-214ENST00000560628 MRPL11Q9Y3B7 192 aaKnown RBP11.92□□□□□ -0.5
LDLR-214ENST00000560628 UMODL1Q5DID0 1318 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 E7EWF7 191 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 SGSM2O43147 1006 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 B4GALT4O60513 344 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 ARIH2O95376 493 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 CFBP00751 764 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 CPT1AP50416 773 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 CCL23P55773 120 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 CHMP4BP1P59074 171 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 PURAQ00577 322 aaKnown RBP11.91□□□□□ -0.5
LDLR-214ENST00000560628 SEPT14Q6ZU15 432 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 STOX1Q6ZVD7 989 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 ZNF365Q70YC5 407 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 MCF2L2Q86YR7 1114 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 SCFD2Q8WU76 684 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 RMDN3Q96TC7 470 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms