RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 FOXD4L3Q6VB84 417 aaPredicted RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 GADL1Q6ZQY3 521 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 CATSPERGQ6ZRH7 1159 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 KRT25Q7Z3Z0 450 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 REXO1Q8N1G1 1221 aaKnown RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 SAMD3Q8N6K7 520 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 MB21D1Q8N884 522 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 COA7Q96BR5 231 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 SPATA32Q96LK8 384 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 PARK7Q99497 189 aaKnown RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 MAF1Q9H063 256 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 RANBP17Q9H2T7 1088 aaKnown RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 PSTPIP2Q9H939 334 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 ZFYVE28Q9HCC9 887 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 RIC8AQ9NPQ8 531 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 GJB4Q9NTQ9 266 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 PPP1R9AQ9ULJ8 1098 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 MRPL11Q9Y3B7 192 aaKnown RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 PTPRFP10586 1907 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 TCHHQ07283 1943 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 LOC285556D6RIA3 1793 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 ABCB11O95342 1321 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 IGF2BP3O00425 579 aaKnown RBP eCLIP7.35□□□□□ -1.23
SPG11-221ENST00000560299 FOXN1O15353 648 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 FIBPO43427 364 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 FOSP01100 380 aaPredicted RBP7.35□□□□□ -1.23
SPG11-221ENST00000560299 ICAM1P05362 532 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 OSBPP22059 807 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 TRAPPC10P48553 1259 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 OAZ1P54368 228 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 NONOQ15233 471 aaKnown RBP eCLIP7.35□□□□□ -1.23
SPG11-221ENST00000560299 SLC35G1Q2M3R5 365 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 GPAT2Q6NUI2 795 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 CCDC174Q6PII3 467 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 C17orf99Q6UX52 265 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 PAXIP1Q6ZW49 1069 aaPredicted RBP7.35□□□□□ -1.23
SPG11-221ENST00000560299 MCF2L2Q86YR7 1114 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 ZIC5Q96T25 663 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 NAP1L4Q99733 375 aaKnown RBP7.35□□□□□ -1.23
SPG11-221ENST00000560299 ANP32EQ9BTT0 268 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 EHMT1Q9H9B1 1298 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 SLC38A10Q9HBR0 1119 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 POLR3EQ9NVU0 708 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.35□□□□□ -1.23
SPG11-221ENST00000560299 CCPG1Q9ULG6 757 aa7.35□□□□□ -1.23
SPG11-221ENST00000560299 ELP1O95163 1332 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 SPDYE3A6NKU9 549 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 KIF28PB7ZC32 967 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 BTBD19C9JJ37 291 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 GCOM1H8Y6P7 765 aaPredicted RBP7.34□□□□□ -1.23
SPG11-221ENST00000560299 GPR25O00155 361 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 VWA5AO00534 786 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 PRPF40AO75400 957 aaKnown RBP7.34□□□□□ -1.23
SPG11-221ENST00000560299 YEATS4O95619 227 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 POLR2MP0CAP2 368 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 BCRP11274 1271 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 IRX5P78411 483 aaPredicted RBP7.34□□□□□ -1.23
SPG11-221ENST00000560299 NR5A1Q13285 461 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 AP3B2Q13367 1082 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 STK38Q15208 465 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 TKFCQ3LXA3 575 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 USH1GQ495M9 461 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 ANO1Q5XXA6 986 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 PIK3AP1Q6ZUJ8 805 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 CPXCR1Q8N123 301 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 KCNG4Q8TDN1 519 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 ERO1AQ96HE7 468 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 FBXO28Q9NVF7 368 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 MAP3K20Q9NYL2 800 aaKnown RBP7.34□□□□□ -1.23
SPG11-221ENST00000560299 RTEL1Q9NZ71 1219 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 TFIP11Q9UBB9 837 aaKnown RBP7.34□□□□□ -1.23
SPG11-221ENST00000560299 MORF4L1Q9UBU8 362 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 RCOR1Q9UKL0 485 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 PCDHA6Q9UN73 950 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 ADAMTS5Q9UNA0 930 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 CNPY2Q9Y2B0 182 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 PCDHA8Q9Y5H6 950 aa7.34□□□□□ -1.23
SPG11-221ENST00000560299 PIK3CDO00329 1044 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 PDHXO00330 501 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 ATP2A1O14983 1001 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 SPTLC2O15270 562 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 PPP1R11O60927 126 aaPredicted RBP7.33□□□□□ -1.24
SPG11-221ENST00000560299 FKTNO75072 461 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 TRPA1O75762 1119 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 MBD3O95983 291 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 ATP2B1P20020 1258 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 COPB2P35606 906 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 NASPP49321 788 aaPredicted RBP7.33□□□□□ -1.24
SPG11-221ENST00000560299 SNAP25P60880 206 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 UBE2HP62256 183 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 CEBPZQ03701 1054 aaKnown RBP7.33□□□□□ -1.24
SPG11-221ENST00000560299 ORC2Q13416 577 aaPredicted RBP7.33□□□□□ -1.24
SPG11-221ENST00000560299 NPY5RQ15761 445 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 FAM110CQ1W6H9 321 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 TYW1BQ6NUM6 668 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 FAM173BQ6P4H8 233 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.33□□□□□ -1.24
SPG11-221ENST00000560299 FAM43AQ8N2R8 423 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 TMEM87AQ8NBN3 555 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 OXER1Q8TDS5 423 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms