RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 OR52Z1P0C646 297 aa7.83□□□□□ -1.16
USP3-210ENST00000559192 PRPHP41219 470 aa7.83□□□□□ -1.16
USP3-210ENST00000559192 NCAPHQ15003 741 aa7.83□□□□□ -1.16
USP3-210ENST00000559192 FOXR1Q6PIV2 292 aa7.83□□□□□ -1.16
USP3-210ENST00000559192 LRRC31Q6UY01 552 aa7.83□□□□□ -1.16
USP3-210ENST00000559192 STRBPQ96SI9 672 aaKnown RBP7.83□□□□□ -1.16
USP3-210ENST00000559192 AP1M1Q9BXS5 423 aa7.83□□□□□ -1.16
USP3-210ENST00000559192 SMARCAL1Q9NZC9 954 aa7.83□□□□□ -1.16
USP3-210ENST00000559192 FRMPD2Q68DX3 1309 aaPredicted RBP7.83□□□□□ -1.16
USP3-210ENST00000559192 SNAP23O00161 211 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 LIFRP42702 1097 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 CACNB1Q02641 598 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 GKAP1Q5VSY0 366 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 TRIM65Q6PJ69 517 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 RASGRP2Q7LDG7 609 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 ZNF579Q8NAF0 562 aaKnown RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 WHAMMQ8TF30 809 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 RPGRQ92834 1020 aaKnown RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 KAZALD1Q96I82 304 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 SEC31BQ9NQW1 1179 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 PLAAQ9Y263 795 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 KNDC1Q76NI1 1749 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 C6orf229H3BNL8 230 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 CASQ2O14958 399 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 TNFAIP3P21580 790 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 ZBED6P86452 979 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 GFPT1Q06210 699 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 CALCOCO2Q13137 446 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 INTS8Q75QN2 995 aaKnown RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 MAPKAPK5Q8IW41 473 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 CNPY4Q8N129 248 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 PPP1R14CQ8TAE6 165 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 COG1Q8WTW3 980 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.82□□□□□ -1.16
USP3-210ENST00000559192 PCDHA4Q9UN74 947 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 ABCC12Q96J65 1359 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 TFRCP02786 760 aaKnown RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 GYPCP04921 128 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 CTNNA2P26232 953 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 SF3B2Q13435 895 aaKnown RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 RASGRF1Q13972 1273 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 FAM133BQ5BKY9 247 aaKnown RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 TRIM68Q6AZZ1 485 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 TGFBRAP1Q8WUH2 860 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 PIK3R5Q8WYR1 880 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 TSPYL2Q9H2G4 693 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 TPX2Q9ULW0 747 aaKnown RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 CPDO75976 1380 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 CLTCQ00610 1675 aaKnown RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 STK36Q9NRP7 1315 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 LRRIQ3A6PVS8 624 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 PP2D1A8MPX8 630 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 LGALS16A8MUM7 142 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 SEMA3EO15041 775 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 CETN3O15182 167 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 RGS16O15492 202 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 PRPF3O43395 683 aaKnown RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 CHMP2AO43633 222 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 ZWINTO95229 277 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 PLCG1P19174 1290 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 ADCY7P51828 1080 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 ACTN3Q08043 901 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 CCDC93Q567U6 631 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 ALS2CLQ60I27 953 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 CCDC170Q8IYT3 715 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 MYOCDQ8IZQ8 938 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 SH2D3CQ8N5H7 860 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 FAM133AQ8N9E0 248 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 IFT74Q96LB3 600 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 ANKZF1Q9H8Y5 726 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 PANK4Q9NVE7 773 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 ANAPC4Q9UJX5 808 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 NCAPD2Q15021 1401 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 NMT2O60551 498 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 POTEJP0CG39 1038 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 HIBADHP31937 336 aaKnown RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 IFNAR2P48551 515 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 GUCY1A3Q02108 690 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 CHRNDQ07001 517 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 SETDB1Q15047 1291 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 BEND6Q5SZJ8 279 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 PNMA1Q8ND90 353 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 CCDC97Q96F63 343 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 DHTKD1Q96HY7 919 aaPredicted RBP7.82□□□□□ -1.16
USP3-210ENST00000559192 LRRC1Q9BTT6 524 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 VCX3BQ9H321 246 aa7.82□□□□□ -1.16
USP3-210ENST00000559192 DIP2CQ9Y2E4 1556 aa7.81□□□□□ -1.16
USP3-210ENST00000559192 NPHP4O75161 1426 aaPredicted RBP7.81□□□□□ -1.16
USP3-210ENST00000559192 ANKARQ7Z5J8 1434 aa7.81□□□□□ -1.16
USP3-210ENST00000559192 ACTN4O43707 911 aaKnown RBP7.81□□□□□ -1.16
USP3-210ENST00000559192 EEF2P13639 858 aaKnown RBP7.81□□□□□ -1.16
USP3-210ENST00000559192 FERP16591 822 aa7.81□□□□□ -1.16
USP3-210ENST00000559192 DISC1Q9NRI5 854 aa7.81□□□□□ -1.16
USP3-210ENST00000559192 ATG3Q9NT62 314 aa7.81□□□□□ -1.16
USP3-210ENST00000559192 PSD3Q9NYI0 1048 aa7.81□□□□□ -1.16
USP3-210ENST00000559192 NOVA2Q9UNW9 492 aaKnown RBP7.81□□□□□ -1.16
USP3-210ENST00000559192 A0A0U1RQJ8 604 aa7.81□□□□□ -1.16
USP3-210ENST00000559192 SPOPO43791 374 aa7.81□□□□□ -1.16
USP3-210ENST00000559192 CALUO43852 315 aaPredicted RBP7.81□□□□□ -1.16
USP3-210ENST00000559192 FLOT1O75955 427 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms