RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PRRT2Q7Z6L0 340 aaPredicted RBP7.87□□□□□ -1.15
VPS13C-208ENST00000559119 OR6P1Q8NGX9 317 aa7.87□□□□□ -1.15
VPS13C-208ENST00000559119 FNIP1Q8TF40 1166 aa7.87□□□□□ -1.15
VPS13C-208ENST00000559119 KLHL25Q9H0H3 589 aa7.87□□□□□ -1.15
VPS13C-208ENST00000559119 PCDHB10Q9UN67 800 aa7.87□□□□□ -1.15
VPS13C-208ENST00000559119 PLA2G2DQ9UNK4 145 aa7.87□□□□□ -1.15
VPS13C-208ENST00000559119 VAMP4O75379 141 aa7.86□□□□□ -1.15
VPS13C-208ENST00000559119 GLI4P10075 376 aa7.86□□□□□ -1.15
VPS13C-208ENST00000559119 ATF2P15336 505 aa7.86□□□□□ -1.15
VPS13C-208ENST00000559119 SOX9P48436 509 aa7.86□□□□□ -1.15
VPS13C-208ENST00000559119 GIPRP48546 466 aa7.86□□□□□ -1.15
VPS13C-208ENST00000559119 LZTR1Q8N653 840 aa7.86□□□□□ -1.15
VPS13C-208ENST00000559119 C19orf47Q8N9M1 422 aaKnown RBP7.86□□□□□ -1.15
VPS13C-208ENST00000559119 FGD4Q96M96 766 aa7.86□□□□□ -1.15
VPS13C-208ENST00000559119 MCMBPQ9BTE3 642 aa7.86□□□□□ -1.15
VPS13C-208ENST00000559119 NUDT5Q9UKK9 219 aa7.86□□□□□ -1.15
VPS13C-208ENST00000559119 RWDD3Q9Y3V2 267 aa7.86□□□□□ -1.15
VPS13C-208ENST00000559119 A0A1W2PQH9 124 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 C2orf71A6NGG8 1288 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 PLA2G1BP04054 148 aaKnown RBP7.85□□□□□ -1.15
VPS13C-208ENST00000559119 EPHX1P07099 455 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 ASGR2P07307 311 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 AMPD2Q01433 879 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 PPP2R5EQ16537 467 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 VWA3BQ502W6 1294 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 GPRASP2Q96D09 838 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 RXFP1Q9HBX9 757 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 SUGT1Q9Y2Z0 365 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 BACE2Q9Y5Z0 518 aa7.85□□□□□ -1.15
VPS13C-208ENST00000559119 MC3RP41968 323 aa7.84□□□□□ -1.15
VPS13C-208ENST00000559119 MFAP1P55081 439 aaKnown RBP7.84□□□□□ -1.15
VPS13C-208ENST00000559119 LIPIQ6XZB0 460 aa7.84□□□□□ -1.15
VPS13C-208ENST00000559119 DBX2Q6ZNG2 339 aa7.84□□□□□ -1.15
VPS13C-208ENST00000559119 ADGRG2Q8IZP9 1017 aa7.84□□□□□ -1.15
VPS13C-208ENST00000559119 USP33Q8TEY7 942 aa7.84□□□□□ -1.15
VPS13C-208ENST00000559119 KRTAP4-5Q9BYR2 181 aa7.84□□□□□ -1.15
VPS13C-208ENST00000559119 USP40Q9NVE5 1235 aa7.84□□□□□ -1.15
VPS13C-208ENST00000559119 CGGBP1Q9UFW8 167 aaPredicted RBP7.84□□□□□ -1.15
VPS13C-208ENST00000559119 RECKO95980 971 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 PAMP19021 973 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 VAMP1P23763 118 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 PLP2Q04941 152 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 GRB10Q13322 594 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 SAPCD2Q86UD0 394 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 CPNE8Q86YQ8 564 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 ARHGEF39Q8N4T4 335 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 NETO2Q8NC67 525 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 RASGRP4Q8TDF6 673 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 CPLX3Q8WVH0 158 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 TSPAN17Q96FV3 270 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 PEX11GQ96HA9 241 aa7.83□□□□□ -1.16
VPS13C-208ENST00000559119 TRBV23OR9-2A0A075B6M9 112 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 A0A1B0GTL3 188 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 PMLP29590 882 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 HTRA3P83110 453 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 RBM10P98175 930 aaKnown RBP7.82□□□□□ -1.16
VPS13C-208ENST00000559119 TRIM26Q12899 539 aaPredicted RBP7.82□□□□□ -1.16
VPS13C-208ENST00000559119 SLC9A5Q14940 896 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 B3GNT8Q7Z7M8 397 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 ZNF526Q8TF50 670 aaPredicted RBP7.82□□□□□ -1.16
VPS13C-208ENST00000559119 KLHL6Q8WZ60 621 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 RCC1LQ96I51 464 aaKnown RBP7.82□□□□□ -1.16
VPS13C-208ENST00000559119 SPATA25Q9BR10 227 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 BDH2Q9BUT1 245 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 BCAS3Q9H6U6 928 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 GULP1Q9UBP9 304 aa7.82□□□□□ -1.16
VPS13C-208ENST00000559119 NPHP3-ACAD11A0A0J9YXS1 232 aa7.81□□□□□ -1.16
VPS13C-208ENST00000559119 NT5DC1Q5TFE4 455 aa7.81□□□□□ -1.16
VPS13C-208ENST00000559119 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.81□□□□□ -1.16
VPS13C-208ENST00000559119 SH3D21A4FU49 640 aa7.8□□□□□ -1.16
VPS13C-208ENST00000559119 NPHS1O60500 1241 aa7.8□□□□□ -1.16
VPS13C-208ENST00000559119 ZBTB7AO95365 584 aa7.8□□□□□ -1.16
VPS13C-208ENST00000559119 RTP5Q14D33 572 aa7.8□□□□□ -1.16
VPS13C-208ENST00000559119 UBXN11Q5T124 520 aa7.8□□□□□ -1.16
VPS13C-208ENST00000559119 METTL16Q86W50 562 aaKnown RBP7.8□□□□□ -1.16
VPS13C-208ENST00000559119 FBLN5Q9UBX5 448 aa7.8□□□□□ -1.16
VPS13C-208ENST00000559119 ANKRD34BA5PLL1 514 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 PRICKLE3O43900 615 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-208ENST00000559119 ADRB1P08588 477 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 NASPP49321 788 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-208ENST00000559119 ZFYVE27Q5T4F4 411 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 WWC2Q6AWC2 1192 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 KIAA1211LQ6NV74 962 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 VHLLQ6RSH7 139 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 SMARCC2Q8TAQ2 1214 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 BORCS6Q96GS4 357 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 MTA3Q9BTC8 594 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.79□□□□□ -1.16
VPS13C-208ENST00000559119 JAG2Q9Y219 1238 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 AKT3Q9Y243 479 aa7.79□□□□□ -1.16
VPS13C-208ENST00000559119 PPP1R11O60927 126 aaPredicted RBP7.78□□□□□ -1.16
VPS13C-208ENST00000559119 CACNB2Q08289 660 aaPredicted RBP7.78□□□□□ -1.16
VPS13C-208ENST00000559119 SPATS1Q496A3 300 aa7.78□□□□□ -1.16
VPS13C-208ENST00000559119 NT5DC4Q86YG4 428 aa7.78□□□□□ -1.16
VPS13C-208ENST00000559119 CRACR2BQ8N4Y2 399 aaPredicted RBP7.78□□□□□ -1.16
VPS13C-208ENST00000559119 CPA5Q8WXQ8 436 aa7.78□□□□□ -1.16
VPS13C-208ENST00000559119 SHDQ96IW2 340 aa7.78□□□□□ -1.16
VPS13C-208ENST00000559119 C7orf72A4D263 438 aa7.77□□□□□ -1.17
VPS13C-208ENST00000559119 KCNH1O95259 989 aa7.77□□□□□ -1.17
VPS13C-208ENST00000559119 FUCA1P04066 466 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms