RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ATG9AQ7Z3C6 839 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 AMIGO3Q86WK7 504 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 OR13H1Q8NG92 308 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 GRAPLQ8TC17 118 aaPredicted RBP6.08□□□□□ -1.44
LDLR-209ENST00000558528 CEP63Q96MT8 703 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 NECAB3Q96P71 396 aaPredicted RBP6.08□□□□□ -1.44
LDLR-209ENST00000558528 CRAMP1Q96RY5 1269 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 CCDC8Q9H0W5 538 aaPredicted RBP6.08□□□□□ -1.44
LDLR-209ENST00000558528 CAAP1Q9H8G2 361 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 SALL4Q9UJQ4 1053 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 SLC12A7Q9Y666 1083 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 TAF1LQ8IZX4 1826 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 LTBP1Q14766 1721 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 RIC1Q4ADV7 1423 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 ABCC12Q96J65 1359 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 UBR3Q6ZT12 1888 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 KLRG2A4D1S0 409 aaPredicted RBP6.07□□□□□ -1.44
LDLR-209ENST00000558528 POLRMTO00411 1230 aaKnown RBP6.07□□□□□ -1.44
LDLR-209ENST00000558528 KHNYNO15037 678 aaKnown RBP6.07□□□□□ -1.44
LDLR-209ENST00000558528 CAND2O75155 1236 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 ZIC2O95409 532 aaPredicted RBP6.07□□□□□ -1.44
LDLR-209ENST00000558528 ZFYP08048 801 aaPredicted RBP6.07□□□□□ -1.44
LDLR-209ENST00000558528 DPEP1P16444 411 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 ATP4AP20648 1035 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 KCNA3P22001 575 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 HOXA10P31260 410 aaPredicted RBP6.07□□□□□ -1.44
LDLR-209ENST00000558528 STAT3P40763 770 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 KCNJ4P48050 445 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 PTPN5P54829 565 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 TIMM10P62072 90 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 LRRC24Q50LG9 513 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 TM4SF20Q53R12 229 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 ARSJQ5FYB0 599 aaPredicted RBP6.07□□□□□ -1.44
LDLR-209ENST00000558528 CT47A1Q5JQC4 288 aaPredicted RBP6.07□□□□□ -1.44
LDLR-209ENST00000558528 SAMD5Q5TGI4 173 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 WWC2Q6AWC2 1192 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 PRR5LQ6MZQ0 368 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 LRRC69Q6ZNQ3 347 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 SMIM5Q71RC9 77 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 LSRQ86X29 649 aaPredicted RBP6.07□□□□□ -1.44
LDLR-209ENST00000558528 SYNE4Q8N205 404 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 KLHDC4Q8TBB5 520 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 PI4K2BQ8TCG2 481 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 NINJ1Q92982 152 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 MRGPRX2Q96LB1 330 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 AGBL1Q96MI9 1066 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 ZIC5Q96T25 663 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 TCF12Q99081 682 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 HAUS7Q99871 368 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 SPOCK3Q9BQ16 436 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.07□□□□□ -1.44
LDLR-209ENST00000558528 UBA5Q9GZZ9 404 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 EPN3Q9H201 632 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 EFCC1Q9HA90 598 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 DIAPH3Q9NSV4 1193 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 DZANK1Q9NVP4 752 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 TJP1Q07157 1748 aa6.07□□□□□ -1.44
LDLR-209ENST00000558528 RAD50Q92878 1312 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 H0YIN7 160 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 ENC1O14682 589 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 CREB3O43889 395 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 RFPL3O75679 317 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 GJB6O95452 261 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 F13A1P00488 732 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 GSPT1P15170 499 aaKnown RBP6.06□□□□□ -1.44
LDLR-209ENST00000558528 NPR1P16066 1061 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 CPEP16870 476 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 SOX18P35713 384 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 SOX10P56693 466 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 RHBDL3P58872 404 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 PPP2R3AQ06190 1150 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 CHRNDQ07001 517 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 BECN1Q14457 450 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 LRRC14Q15048 493 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 CRY2Q49AN0 593 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 EEPD1Q7L9B9 569 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 REC114Q7Z4M0 266 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 NIM1KQ8IY84 436 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 PGBD3Q8N328 593 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 ITPKCQ96DU7 683 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 MASTLQ96GX5 879 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 DBNDD2Q9BQY9 259 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 TSEN34Q9BSV6 310 aaKnown RBP6.06□□□□□ -1.44
LDLR-209ENST00000558528 PUS3Q9BZE2 481 aaKnown RBP6.06□□□□□ -1.44
LDLR-209ENST00000558528 C22orf23Q9BZE7 217 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 BOLA2Q9H3K6 86 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 ZNF395Q9H8N7 513 aaPredicted RBP6.06□□□□□ -1.44
LDLR-209ENST00000558528 LATS2Q9NRM7 1088 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 ZMYM5Q9UJ78 669 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 DBNLQ9UJU6 430 aaKnown RBP6.06□□□□□ -1.44
LDLR-209ENST00000558528 CYP8B1Q9UNU6 501 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 MINPP1Q9UNW1 487 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 RFX7Q2KHR2 1363 aa6.06□□□□□ -1.44
LDLR-209ENST00000558528 C4BP0C0L5 1744 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 WDR33Q9C0J8 1336 aaKnown RBP6.05□□□□□ -1.44
LDLR-209ENST00000558528 FAM221AA4D161 298 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 IQCA1LA6NCM1 817 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 CILPO75339 1184 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 DDAH1O94760 285 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 KIF4AO95239 1232 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms