RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 TMC3Q7Z5M5 1100 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 MTDHQ86UE4 582 aaKnown RBP4.15□□□□□ -1.75
TRAV28-201ENST00000557548 PASD1Q8IV76 773 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 PPIL6Q8IXY8 311 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 NXPE1Q8N323 547 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 DCAF4Q8WV16 495 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 CHMP4CQ96CF2 233 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 FBXL18Q96ME1 805 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 RPS6KC1Q96S38 1066 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 PHF20Q9BVI0 1012 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 MRPL18Q9H0U6 180 aaKnown RBP4.15□□□□□ -1.75
TRAV28-201ENST00000557548 ACSS3Q9H6R3 686 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 MINPP1Q9UNW1 487 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 SF3B6Q9Y3B4 125 aaKnown RBP4.15□□□□□ -1.75
TRAV28-201ENST00000557548 PCDHA8Q9Y5H6 950 aa4.15□□□□□ -1.75
TRAV28-201ENST00000557548 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.14□□□□□ -1.75
TRAV28-201ENST00000557548 E2F8A0AVK6 867 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 STXBP3O00186 592 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 CBX4O00257 560 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 PLIN1O60240 522 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 ZEB2O60315 1214 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 PRKD3O94806 890 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 APPP05067 770 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 KRT18P05783 430 aaKnown RBP4.14□□□□□ -1.75
TRAV28-201ENST00000557548 KCNA6P17658 529 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 ADCYAP1R1P41586 468 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 USP11P51784 963 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 UBE4AQ14139 1066 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 SART3Q15020 963 aaKnown RBP4.14□□□□□ -1.75
TRAV28-201ENST00000557548 ABCB5Q2M3G0 1257 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 DDX53Q86TM3 631 aaKnown RBP4.14□□□□□ -1.75
TRAV28-201ENST00000557548 KREMEN2Q8NCW0 462 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 TTC8Q8TAM2 541 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 MCMBPQ9BTE3 642 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 PRDM10Q9NQV6 1147 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 PRR13Q9NZ81 148 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 ZNF180Q9UJW8 692 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 TNKSO95271 1327 aa4.14□□□□□ -1.75
TRAV28-201ENST00000557548 F8W735 103 aaPredicted RBP4.13□□□□□ -1.75
TRAV28-201ENST00000557548 DYNC1LI2O43237 492 aaPredicted RBP4.13□□□□□ -1.75
TRAV28-201ENST00000557548 SART1O43290 800 aaKnown RBP4.13□□□□□ -1.75
TRAV28-201ENST00000557548 PRPF3O43395 683 aaKnown RBP4.13□□□□□ -1.75
TRAV28-201ENST00000557548 SIGLEC6O43699 453 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 GAS2O43903 313 aaKnown RBP4.13□□□□□ -1.75
TRAV28-201ENST00000557548 FBXO21O94952 628 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 ALX3O95076 343 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 PRAMEF1O95521 474 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 THBDP07204 575 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 CD3EP07766 207 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 NFICP08651 508 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 CD97P48960 835 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 DSG1Q02413 1049 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 CDK5R2Q13319 367 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 MLC1Q15049 377 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 FAM102BQ5T8I3 360 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 IQSEC1Q6DN90 963 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 PPP4R4Q6NUP7 873 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 CDPF1Q6NVV7 123 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 IGF2-ASQ6U949 168 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 CRTC3Q6UUV7 619 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 ANKLE2Q86XL3 938 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 ZC3H7AQ8IWR0 971 aaKnown RBP4.13□□□□□ -1.75
TRAV28-201ENST00000557548 SMC5Q8IY18 1101 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 TOP6BLQ8N6T0 577 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 IGSF22Q8N9C0 903 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 FBLIM1Q8WUP2 373 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 JPH3Q8WXH2 748 aaPredicted RBP4.13□□□□□ -1.75
TRAV28-201ENST00000557548 TP53INP1Q96A56 240 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 GPR101Q96P66 508 aaPredicted RBP4.13□□□□□ -1.75
TRAV28-201ENST00000557548 ORAI3Q9BRQ5 295 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 RHOBTB2Q9BYZ6 727 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 SEMA6CQ9H3T2 930 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 ARNT2Q9HBZ2 717 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 GPRC5CQ9NQ84 441 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 CHST7Q9NS84 486 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 TPX2Q9ULW0 747 aaKnown RBP4.13□□□□□ -1.75
TRAV28-201ENST00000557548 COQ6Q9Y2Z9 468 aa4.13□□□□□ -1.75
TRAV28-201ENST00000557548 WDR64B1ANS9 1081 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 C9orf172C9J069 976 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 ARVCFO00192 962 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 MEFVO15553 781 aaPredicted RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 MSCO60682 206 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 GAS7O60861 476 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 EIF3JO75822 258 aaKnown RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 ABLIM3O94929 683 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 FKBP9O95302 570 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 F2P00734 622 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 MYL1P05976 194 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 SRGAP2CP0DJJ0 459 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 IFNGR1P15260 489 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 NAT1P18440 290 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 IARSP41252 1262 aaKnown RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 CTSKP43235 329 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 GPR85P60893 370 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 POU4F1Q01851 419 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 TRIM28Q13263 835 aaKnown RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 NMIQ13287 307 aaPredicted RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 PTPN21Q16825 1174 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 ATP13A4Q4VNC1 1196 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 SYCP2LQ5T4T6 812 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms