RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 PTGS1P23219 599 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 CALML3P27482 149 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 NUCB1Q02818 461 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 ITGA7Q13683 1181 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 DUSP28Q4G0W2 176 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 TMEM63BQ5T3F8 832 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 RNF207Q6ZRF8 634 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 PHF6Q8IWS0 365 aaKnown RBP eCLIP13□□□□□ -0.33
CCDC88C-213ENST00000557455 SLC43A3Q8NBI5 491 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 MYLIPQ8WY64 445 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 MPHOSPH6Q99547 160 aaKnown RBP13□□□□□ -0.33
CCDC88C-213ENST00000557455 ZKSCAN3Q9BRR0 538 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 SEZ6LQ9BYH1 1024 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 DIAPH3Q9NSV4 1193 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 WDR19Q8NEZ3 1342 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 HIP1O00291 1037 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 CYP2C18P33260 490 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 NT5C2P49902 561 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 CCDC178Q5BJE1 867 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 TMEM240Q5SV17 173 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 GPATCH4Q5T3I0 446 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 PSRC1Q6PGN9 363 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 SLC30A10Q6XR72 485 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 C16orf59Q7L2K0 433 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 IQCA1Q86XH1 822 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 DGKHQ86XP1 1220 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 MAFAQ8NHW3 353 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 EXOC6Q8TAG9 804 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 CLEC4DQ8WXI8 215 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 WDR11Q9BZH6 1224 aa12.99□□□□□ -0.33
CCDC88C-213ENST00000557455 GBF1Q92538 1859 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 GRIN2DO15399 1336 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 RBM47A0AV96 593 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 KDM4AO75164 1064 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 GOLGA8HP0CJ92 632 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 ACRP10323 421 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 FOSL2P15408 326 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 DNAJB2P25686 324 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 PSMC6P62333 389 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 RPS6P62753 249 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 PDE4DQ08499 809 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 USH1GQ495M9 461 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 ZNF365Q70YC5 407 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 PNMA1Q8ND90 353 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 DNERQ8NFT8 737 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 HIPK3Q9H422 1215 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 KAT14Q9H8E8 782 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 IL23AQ9NPF7 189 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 POLR3EQ9NVU0 708 aa12.98□□□□□ -0.33
CCDC88C-213ENST00000557455 B4DLN1 442 aa12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 B4E1Z4 1266 aa12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 B4GALT4O60513 344 aa12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 CPT1AP50416 773 aa12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 MRPL12P52815 198 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 IMMTQ16891 758 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 OR6J1Q8NGC5 347 aa12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 ZSCAN10Q96SZ4 725 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 DSCC1Q9BVC3 393 aa12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 UBA5Q9GZZ9 404 aa12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 TRPV6Q9H1D0 765 aa12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 CPVLQ9H3G5 476 aa12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 GPHNQ9NQX3 736 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 CUL9Q8IWT3 2517 aa12.97□□□□□ -0.33
CCDC88C-213ENST00000557455 KIAA1217Q5T5P2 1943 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 UMODL1Q5DID0 1318 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 MYL3P08590 195 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 CCL23P55773 120 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 GRIN2CQ14957 1233 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 PPP2R5BQ15173 497 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 CDC37Q16543 378 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 BRDTQ58F21 947 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 RASIP1Q5U651 963 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 RGS22Q8NE09 1264 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 TIFAQ96CG3 184 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 NOC4LQ9BVI4 516 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 MTIF3Q9H2K0 278 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 ZNF576Q9H609 170 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 ZSWIM5Q9P217 1185 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 CTNNA3Q9UI47 895 aa12.96□□□□□ -0.33
CCDC88C-213ENST00000557455 TNKSO95271 1327 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 RAD50Q92878 1312 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 SCN10AQ9Y5Y9 1956 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 GRXCR1A8MXD5 290 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 NKRFO15226 690 aaKnown RBP eCLIP12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 FGBP02675 491 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 EDNRBP24530 442 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 PURAQ00577 322 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 ASPRV1Q53RT3 343 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 ADGRF4Q8IZF3 695 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 ENAHQ8N8S7 591 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 SCFD2Q8WU76 684 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 HERVK_113Q902F9 699 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 ANKS1AQ92625 1134 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 MTG1Q9BT17 334 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 COL25A1Q9BXS0 654 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 PBX4Q9BYU1 374 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 KRT23Q9C075 422 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 ALDH8A1Q9H2A2 487 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 CNNM2Q9H8M5 875 aa12.95□□□□□ -0.34
CCDC88C-213ENST00000557455 MYO9BQ13459 2157 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms