RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 NMT2O60551 498 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 OR52Z1P0C646 297 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 CRKLP46109 303 aaKnown RBP18.11■□□□□ 0.49
SHMT2-231ENST00000557433 APBA1Q02410 837 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 CCDC96Q2M329 555 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 ANKRD40Q6AI12 368 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 CLEC4GQ6UXB4 293 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 PNMA1Q8ND90 353 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 IPO4Q8TEX9 1081 aaKnown RBP18.11■□□□□ 0.49
SHMT2-231ENST00000557433 CAVIN3Q969G5 261 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 TMEM60Q9H2L4 133 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 RNF216Q9NWF9 866 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-231ENST00000557433 PCDHA13Q9Y5I0 950 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 MACROD2A1Z1Q3 448 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 PLCG1P19174 1290 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 MECOMQ03112 1051 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 RNF10Q8N5U6 811 aaKnown RBP18.1■□□□□ 0.49
SHMT2-231ENST00000557433 CASZ1Q86V15 1759 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 PAFAH1B1P43034 410 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 ASIC1P78348 528 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 C2orf54Q08AI8 447 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 SPTY2D1Q68D10 685 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-231ENST00000557433 CENPPQ6IPU0 288 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 SPATA4Q8NEY3 305 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 LRWD1Q9UFC0 647 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 MINPP1Q9UNW1 487 aa18.1■□□□□ 0.49
SHMT2-231ENST00000557433 ROBO3Q96MS0 1386 aa18.09■□□□□ 0.49
SHMT2-231ENST00000557433 PVALEFA0A1B0GWK0 134 aa18.09■□□□□ 0.49
SHMT2-231ENST00000557433 STXBP3O00186 592 aa18.09■□□□□ 0.49
SHMT2-231ENST00000557433 VEGFAP15692 232 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-231ENST00000557433 MAN2A1Q16706 1144 aa18.09■□□□□ 0.49
SHMT2-231ENST00000557433 INF2Q27J81 1249 aa18.09■□□□□ 0.49
SHMT2-231ENST00000557433 VWA3BQ502W6 1294 aa18.09■□□□□ 0.49
SHMT2-231ENST00000557433 GPKOWQ92917 476 aaPredicted RBP eCLIP18.09■□□□□ 0.49
SHMT2-231ENST00000557433 NUCKS1Q9H1E3 243 aaKnown RBP18.09■□□□□ 0.49
SHMT2-231ENST00000557433 BTG4Q9NY30 223 aa18.09■□□□□ 0.49
SHMT2-231ENST00000557433 STK17AQ9UEE5 414 aa18.09■□□□□ 0.49
SHMT2-231ENST00000557433 SSU72P8A0A1W2PR75 194 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 SHTN1A0MZ66 631 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 PP2D1A8MPX8 630 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 VGLL3A8MV65 326 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 EBAG9O00559 213 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 ADAMTS3O15072 1205 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 ZNF185O15231 689 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 MYBL2P10244 700 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 IRAK1P51617 712 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 KIF11P52732 1056 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 SKOR1P84550 965 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 CCDC181Q5TID7 509 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 SND1Q7KZF4 910 aaKnown RBP eCLIP18.08■□□□□ 0.492e-6■■□□□ 11.8
SHMT2-231ENST00000557433 CALML4Q96GE6 196 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 OSBPL9Q96SU4 736 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 CDCA7Q9BWT1 371 aaPredicted RBP18.08■□□□□ 0.49
SHMT2-231ENST00000557433 CAPS2Q9BXY5 557 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 LRRC27Q9C0I9 530 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 ZMYND12Q9H0C1 365 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 STIM2Q9P246 746 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 MAD2L2Q9UI95 211 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 SIK3Q9Y2K2 1263 aa18.08■□□□□ 0.49
SHMT2-231ENST00000557433 ATXN2Q99700 1313 aaKnown RBP18.08■□□□□ 0.49
SHMT2-231ENST00000557433 COL14A1Q05707 1796 aaKnown RBP18.08■□□□□ 0.48
SHMT2-231ENST00000557433 ZNF263O14978 683 aa18.08■□□□□ 0.48
SHMT2-231ENST00000557433 SMARCA1P28370 1054 aa18.08■□□□□ 0.48
SHMT2-231ENST00000557433 GNA11P29992 359 aa18.08■□□□□ 0.48
SHMT2-231ENST00000557433 TFAP4Q01664 338 aa18.08■□□□□ 0.48
SHMT2-231ENST00000557433 LRRC63Q05C16 580 aa18.08■□□□□ 0.48
SHMT2-231ENST00000557433 NONOQ15233 471 aaKnown RBP eCLIP18.08■□□□□ 0.48
SHMT2-231ENST00000557433 TADA2BQ86TJ2 420 aa18.08■□□□□ 0.48
SHMT2-231ENST00000557433 SPATS2Q86XZ4 545 aaKnown RBP18.08■□□□□ 0.48
SHMT2-231ENST00000557433 RUFY1Q96T51 708 aa18.08■□□□□ 0.48
SHMT2-231ENST00000557433 SPZ1Q9BXG8 430 aa18.08■□□□□ 0.48
SHMT2-231ENST00000557433 DEF6Q9H4E7 631 aa18.08■□□□□ 0.48
SHMT2-231ENST00000557433 LUC7LQ9NQ29 371 aaKnown RBP18.08■□□□□ 0.48
SHMT2-231ENST00000557433 TFR2Q9UP52 801 aa18.08■□□□□ 0.48
SHMT2-231ENST00000557433 EIF3HO15372 352 aaKnown RBP eCLIP18.07■□□□□ 0.48
SHMT2-231ENST00000557433 HSF2BPO75031 334 aa18.07■□□□□ 0.48
SHMT2-231ENST00000557433 CYP27A1Q02318 531 aa18.07■□□□□ 0.48
SHMT2-231ENST00000557433 STK4Q13043 487 aa18.07■□□□□ 0.48
SHMT2-231ENST00000557433 MAPK8IP2Q13387 824 aaPredicted RBP18.07■□□□□ 0.48
SHMT2-231ENST00000557433 RASGRP4Q8TDF6 673 aa18.07■□□□□ 0.48
SHMT2-231ENST00000557433 ANKRD2Q9GZV1 360 aa18.07■□□□□ 0.48
SHMT2-231ENST00000557433 NDST4Q9H3R1 872 aa18.07■□□□□ 0.48
SHMT2-231ENST00000557433 DUSP10Q9Y6W6 482 aa18.07■□□□□ 0.48
SHMT2-231ENST00000557433 PALM3A6NDB9 673 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-231ENST00000557433 AKR1B10O60218 316 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 ZMYND10O75800 440 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 ATP6V1AP38606 617 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 KLK7P49862 253 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 TXNRD1Q16881 649 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 C12orf60Q5U649 245 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 ICE2Q659A1 982 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 TYW1BQ6NUM6 668 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 UNC13DQ70J99 1090 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 HEATR3Q7Z4Q2 680 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 C2CD5Q86YS7 1000 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 GUF1Q8N442 669 aaKnown RBP18.06■□□□□ 0.48
SHMT2-231ENST00000557433 SYN2Q92777 582 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-231ENST00000557433 C6orf50Q9HD87 102 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 ARHGAP20Q9P2F6 1191 aa18.06■□□□□ 0.48
SHMT2-231ENST00000557433 MYH1P12882 1939 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms