RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 TRIM60Q495X7 471 aa10.38□□□□□ -0.75
VRK1-206ENST00000557222 SBK1Q52WX2 424 aa10.38□□□□□ -0.75
VRK1-206ENST00000557222 CTR9Q6PD62 1173 aa10.38□□□□□ -0.75
VRK1-206ENST00000557222 SPICE1Q8N0Z3 855 aa10.38□□□□□ -0.75
VRK1-206ENST00000557222 REPS2Q8NFH8 660 aa10.38□□□□□ -0.75
VRK1-206ENST00000557222 TOX2Q96NM4 488 aa10.38□□□□□ -0.75
VRK1-206ENST00000557222 XPNPEP3Q9NQH7 507 aa10.38□□□□□ -0.75
VRK1-206ENST00000557222 PDLIM7Q9NR12 457 aa10.38□□□□□ -0.75
VRK1-206ENST00000557222 NYAP2Q9P242 653 aa10.38□□□□□ -0.75
VRK1-206ENST00000557222 ARPP21Q9UBL0 812 aaPredicted RBP10.38□□□□□ -0.75
VRK1-206ENST00000557222 ZNF214Q9UL59 606 aaPredicted RBP10.38□□□□□ -0.75
VRK1-206ENST00000557222 SYNPO2Q9UMS6 1093 aa10.38□□□□□ -0.75
VRK1-206ENST00000557222 MYH8P13535 1937 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 ATP2A1O14983 1001 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 KIAA0355O15063 1070 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 ZNF865P0CJ78 1059 aaPredicted RBP10.37□□□□□ -0.75
VRK1-206ENST00000557222 AKR1A1P14550 325 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 VARSP26640 1264 aaKnown RBP10.37□□□□□ -0.75
VRK1-206ENST00000557222 TLE2Q04725 743 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 SHHQ15465 462 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 FAM47AQ5JRC9 791 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 PRAMEF19Q5SWL8 479 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.37□□□□□ -0.75
VRK1-206ENST00000557222 BADQ92934 168 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.37□□□□□ -0.75
VRK1-206ENST00000557222 SEMA6BQ9H3T3 888 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 CNPY2Q9Y2B0 182 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 SLC4A4Q9Y6R1 1079 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 LTBP2Q14767 1821 aa10.37□□□□□ -0.75
VRK1-206ENST00000557222 SYNGAP1Q96PV0 1343 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 VCANP13611 3396 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 PARP14Q460N5 1801 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 TRIM43BA6NCK2 446 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 APBB1O00213 710 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 CLTBP09497 229 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 ANO1Q5XXA6 986 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 MAMDC4Q6UXC1 1216 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 ANKRD33Q7Z3H0 272 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 PRPF38AQ8NAV1 312 aaKnown RBP10.36□□□□□ -0.75
VRK1-206ENST00000557222 NUP133Q8WUM0 1156 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 TRIM43Q96BQ3 446 aaPredicted RBP10.36□□□□□ -0.75
VRK1-206ENST00000557222 STRBPQ96SI9 672 aaKnown RBP10.36□□□□□ -0.75
VRK1-206ENST00000557222 TEX13BQ9BXU2 312 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 LRRCC1Q9C099 1032 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 PUS7LQ9H0K6 701 aaKnown RBP10.36□□□□□ -0.75
VRK1-206ENST00000557222 ZNF287Q9HBT7 754 aa10.36□□□□□ -0.75
VRK1-206ENST00000557222 PRDM5Q9NQX1 630 aaPredicted RBP10.36□□□□□ -0.75
VRK1-206ENST00000557222 BAZ2AQ9UIF9 1905 aaKnown RBP10.36□□□□□ -0.75
VRK1-206ENST00000557222 DNAJC25-GNG10A0A024R161 153 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 CYP2D7A0A087X1C5 515 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 A0A1W2PQ45 241 aaPredicted RBP10.35□□□□□ -0.75
VRK1-206ENST00000557222 A0A1W2PQY0 241 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 ADAMTS4O75173 837 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 PGK2P07205 417 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 GNAT2P19087 354 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 CTDSPL2Q05D32 466 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 C9orf50Q5SZB4 431 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 FAM83BQ5T0W9 1011 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 SH3RF1Q7Z6J0 888 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 CLEC10AQ8IUN9 316 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 KLHDC9Q8NEP7 349 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 FOXJ1Q92949 421 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 MKL1Q969V6 931 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 FERMT2Q96AC1 680 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 CDX2Q99626 313 aaPredicted RBP10.35□□□□□ -0.75
VRK1-206ENST00000557222 SLF1Q9BQI6 1058 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 MKNK2Q9HBH9 465 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 FBXO28Q9NVF7 368 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 FAM184BQ9ULE4 1060 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 COG6Q9Y2V7 657 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 EYSQ5T1H1 3165 aa10.35□□□□□ -0.75
VRK1-206ENST00000557222 ELP1O95163 1332 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 GSG1L2A8MUP6 293 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 DCDC2CA8MYV0 355 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 F5H6K3 240 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 ZBED4O75132 1171 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 DUSP11O75319 330 aaKnown RBP10.34□□□□□ -0.75
VRK1-206ENST00000557222 ZFYP08048 801 aaPredicted RBP10.34□□□□□ -0.75
VRK1-206ENST00000557222 RASA1P20936 1047 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 CST5P28325 142 aaPredicted RBP10.34□□□□□ -0.75
VRK1-206ENST00000557222 OAZ1P54368 228 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 KLRC3Q07444 240 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 LRRFIP1Q32MZ4 808 aaKnown RBP10.34□□□□□ -0.75
VRK1-206ENST00000557222 SLFNL1Q499Z3 407 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 KBTBD3Q8NAB2 608 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 DDX11Q96FC9 970 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 COL25A1Q9BXS0 654 aaPredicted RBP10.34□□□□□ -0.75
VRK1-206ENST00000557222 ECHDC1Q9NTX5 307 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 FBXO40Q9UH90 709 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 FEM1BQ9UK73 627 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 WASF2Q9Y6W5 498 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 MYH7P12883 1935 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 CDH23Q9H251 3354 aa10.34□□□□□ -0.75
VRK1-206ENST00000557222 MROH7Q68CQ1 1323 aa10.33□□□□□ -0.76
VRK1-206ENST00000557222 COL11A1P12107 1806 aaPredicted RBP10.33□□□□□ -0.76
VRK1-206ENST00000557222 GREB1LQ9C091 1923 aaPredicted RBP10.33□□□□□ -0.76
VRK1-206ENST00000557222 SPTBN5Q9NRC6 3674 aaKnown RBP10.33□□□□□ -0.76
VRK1-206ENST00000557222 IGKV6D-41A0A0C4DH26 115 aa10.33□□□□□ -0.76
VRK1-206ENST00000557222 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.33□□□□□ -0.76
VRK1-206ENST00000557222 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms