RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 ASPNQ9BXN1 380 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 PANK2Q9BZ23 570 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 GPR62Q9BZJ7 368 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.54□□□□□ -1.84
SLIRP-208ENST00000556956 KBTBD4Q9NVX7 518 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 SLAMF8Q9P0V8 285 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 REV1Q9UBZ9 1251 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 ITSN2Q9NZM3 1697 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 RAPGEF6Q8TEU7 1601 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 ADCY10Q96PN6 1610 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 CLASP1Q7Z460 1538 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 KDM5DQ9BY66 1539 aa3.54□□□□□ -1.84
SLIRP-208ENST00000556956 GPATCH8Q9UKJ3 1502 aaKnown RBP3.54□□□□□ -1.84
SLIRP-208ENST00000556956 PTPRGP23470 1445 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 SCAPERQ9BY12 1400 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 DISP3Q9P2K9 1392 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 CROCC2H7BZ55 1655 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 TPP2P29144 1249 aaPredicted RBP3.53□□□□□ -1.84
SLIRP-208ENST00000556956 MCM5P33992 734 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 CCNFP41002 786 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 ZNF165P49910 485 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 RARSP54136 660 aaKnown RBP3.53□□□□□ -1.84
SLIRP-208ENST00000556956 MFAP1P55081 439 aaKnown RBP3.53□□□□□ -1.84
SLIRP-208ENST00000556956 RNF4P78317 190 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 TAGLNQ01995 201 aaKnown RBP3.53□□□□□ -1.84
SLIRP-208ENST00000556956 FAM160A1Q05DH4 1040 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 CLEC16AQ2KHT3 1053 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 ERMP1Q7Z2K6 904 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 ZSCAN30Q86W11 494 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 IRF2BP1Q8IU81 584 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 CREG2Q8IUH2 290 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 SPPL2CQ8IUH8 684 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 SMC5Q8IY18 1101 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 CCDC146Q8IYE0 955 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 REXO1Q8N1G1 1221 aaKnown RBP3.53□□□□□ -1.84
SLIRP-208ENST00000556956 OXR1Q8N573 874 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 TMEM87AQ8NBN3 555 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 DNAJB8Q8NHS0 232 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 ZNF296Q8WUU4 475 aaPredicted RBP3.53□□□□□ -1.84
SLIRP-208ENST00000556956 RUNDC1Q96C34 613 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 LRRC3Q9BY71 257 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 PCED1AQ9H1Q7 454 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 CHMP4BQ9H444 224 aaKnown RBP3.53□□□□□ -1.84
SLIRP-208ENST00000556956 KCNQ5Q9NR82 932 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 KLHL3Q9UH77 587 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 CORINQ9Y5Q5 1042 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 SHANK2Q9UPX8 1470 aa3.53□□□□□ -1.84
SLIRP-208ENST00000556956 C9orf84Q5VXU9 1444 aa3.53□□□□□ -1.85
SLIRP-208ENST00000556956 PRG4Q92954 1404 aaPredicted RBP3.53□□□□□ -1.85
SLIRP-208ENST00000556956 UPK3BL1B0FP48 263 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 UPK3BL2E5RIL1 263 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 RGS13O14921 159 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 GREM1O60565 184 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 ATE1O95260 518 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 HPXP02790 462 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 RAG1P15918 1043 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 DDIT3P35638 169 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 TNNT2P45379 298 aaPredicted RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 NASPP49321 788 aaPredicted RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 RBM25P49756 843 aaKnown RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 HK2P52789 917 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 ATXN1P54253 815 aaKnown RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 HDAC1Q13547 482 aaPredicted RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 MRPL58Q14197 206 aaKnown RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 MVPQ14764 893 aaKnown RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 RAB3GAP1Q15042 981 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 ZKSCAN2Q63HK3 967 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 FBXL19Q6PCT2 694 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 TSPYL5Q86VY4 417 aaPredicted RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 HOMEZQ8IX15 550 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 SMAP1Q8IYB5 467 aaPredicted RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 TNPO1Q92973 898 aaKnown RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 SIGLEC10Q96LC7 697 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 KREMEN1Q96MU8 473 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 DUSP15Q9H1R2 295 aaPredicted RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 ZNF552Q9H707 407 aaPredicted RBP3.52□□□□□ -1.85
SLIRP-208ENST00000556956 SP110Q9HB58 689 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 SMPD4Q9NXE4 827 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 PODXL2Q9NZ53 605 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 GMIPQ9P107 970 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 DUSP13Q9UII6 198 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 IRAK3Q9Y616 596 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 KIAA0586Q9BVV6 1533 aa3.52□□□□□ -1.85
SLIRP-208ENST00000556956 KIF16BQ96L93 1317 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 ABCC2Q92887 1545 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 SSU72P8A0A1W2PR75 194 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 CHURC1-FNTBB4DL54 471 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 F6X3S4 739 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 DYNC1I1O14576 645 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 IPO8O15397 1037 aaKnown RBP3.51□□□□□ -1.85
SLIRP-208ENST00000556956 ZNF500O60304 480 aaPredicted RBP3.51□□□□□ -1.85
SLIRP-208ENST00000556956 IMPDH2P12268 514 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 LTKP29376 864 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 ZNF76P36508 570 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 HNRNPMP52272 730 aaKnown RBP eCLIP3.51□□□□□ -1.85
SLIRP-208ENST00000556956 ZNF445P59923 1031 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 NUCB2P80303 420 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 CHRNEQ04844 493 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 APOBRQ0VD83 1088 aa3.51□□□□□ -1.85
SLIRP-208ENST00000556956 KLHL40Q2TBA0 621 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms