RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 TICAM2Q86XR7 235 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 EHD2Q9NZN4 543 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 ATP2C2O75185 946 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 SLC1A4P43007 532 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 PROCA1Q8NCQ7 364 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 CDCA7Q9BWT1 371 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 ADAM21Q9UKJ8 722 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 PCDHA12Q9UN75 941 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 DDX39AO00148 427 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 FGFR1OPO95684 399 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 H2AFXP16104 143 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 EIF4A3P38919 411 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 TRIM14Q14142 442 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 CASP8Q14790 479 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 PRR16Q569H4 304 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 C12orf60Q5U649 245 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 CEP89Q96ST8 783 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 DBNDD1Q9H9R9 158 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 GOPCQ9HD26 462 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 LUC7LQ9NQ29 371 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 SLIT3O75094 1523 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 KDM3BQ7LBC6 1761 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 FTCDO95954 541 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 CKAP4Q07065 602 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 SLF2Q8IX21 1173 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 FNBP4Q8N3X1 1017 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 EHBP1Q8NDI1 1231 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 USP21Q9UK80 565 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 PCDHB13Q9Y5F0 798 aa13.5□□□□□ -0.25
CCDC88C-211ENST00000556726 TRAPPC10P48553 1259 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 PABPC4Q13310 644 aaKnown RBP eCLIP13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 DNAAF5Q86Y56 855 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 CCDC51Q96ER9 411 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 LSM14BQ9BX40 385 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 HAUS4Q9H6D7 363 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 FAM204AQ9H8W3 233 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 PACSIN2Q9UNF0 486 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 CCDC151A5D8V7 595 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 SMIM23A6NLE4 172 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 SFI1A8K8P3 1242 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 TBC1D8O95759 1140 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 SARSP49591 514 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 ATP1A2P50993 1020 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 BRD3Q15059 726 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 IL17AQ16552 155 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 CT47A1Q5JQC4 288 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 LARP4BQ92615 738 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 SHISA4Q96DD7 197 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 MMS19Q96T76 1030 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 IL17RBQ9NRM6 502 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 BCS1LQ9Y276 419 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 SAMM50Q9Y512 469 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 CTDP1Q9Y5B0 961 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 BCL9O00512 1426 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 GDF11O95390 407 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 GPBP1Q86WP2 473 aa13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.49□□□□□ -0.25
CCDC88C-211ENST00000556726 ESYT3A0FGR9 886 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 TMEM110-MUSTN1A8MSY1 372 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 TAL1P17542 331 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 HPDP32754 393 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 DGKHQ86XP1 1220 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 CCDC113Q9H0I3 377 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 PSTPIP2Q9H939 334 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 DDX25Q9UHL0 483 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 NPHP3-ACAD11A0A0J9YXS1 232 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 LGALS16A8MUM7 142 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 FANCGO15287 622 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 CCNE1P24864 410 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 MRPL12P52815 198 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 CLEC4GQ6UXB4 293 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 FBXO33Q7Z6M2 555 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 CD209Q9NNX6 404 aa13.48□□□□□ -0.25
CCDC88C-211ENST00000556726 E9PMD0 336 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 STAT3P40763 770 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 GPSM2P81274 684 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 EHHADHQ08426 723 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 WHAMMP3Q1A5X7 153 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 NAA35Q5VZE5 725 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 C8orf74Q6P047 294 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 ZNF384Q8TF68 577 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 BBXQ8WY36 941 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 LACRTQ9GZZ8 138 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 NARFQ9UHQ1 456 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 SPDYE3A6NKU9 549 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 TBCAO75347 108 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 SLC30A10Q6XR72 485 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 TMEM139Q8IV31 216 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 CLIC2O15247 247 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 CFBP00751 764 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 SERPINB2P05120 415 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 AKR1B1P15121 316 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 APBA1Q02410 837 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 GFPT1Q06210 699 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 SF3B3Q15393 1217 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 NFRKBQ6P4R8 1299 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 SYCP3Q8IZU3 236 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 ADSSL1Q8N142 457 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 DDX12PQ92771 950 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 MTRQ99707 1265 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms