RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 USP49Q70CQ1 688 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 FAM43AQ8N2R8 423 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 ZNF784Q8NCA9 323 aaPredicted RBP11.59□□□□□ -0.55
NEK9-205ENST00000555405 SMC1BQ8NDV3 1235 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 KCNG4Q8TDN1 519 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 BRI3BPQ8WY22 251 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 ZIC5Q96T25 663 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 BTBD7Q9P203 1132 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 CEP131Q9UPN4 1083 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 MEIS2O14770 477 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 TECP42680 631 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 Q3C1V9 767 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 SPRYD7Q5W111 196 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 STAMQ92783 540 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 MTMR8Q96EF0 704 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 TAAR1Q96RJ0 339 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 CPA4Q9UI42 421 aa11.59□□□□□ -0.55
NEK9-205ENST00000555405 A0A0G2JLL6 359 aaPredicted RBP11.58□□□□□ -0.56
NEK9-205ENST00000555405 PP2D1A8MPX8 630 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 NR1I2O75469 434 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 CETPP11597 493 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 RGMBQ6NW40 437 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 PRRT2Q7Z6L0 340 aaPredicted RBP11.58□□□□□ -0.56
NEK9-205ENST00000555405 POTEDQ86YR6 584 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 ANP32EQ9BTT0 268 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 TEX13BQ9BXU2 312 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 ZNF536O15090 1300 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 CHMP2AO43633 222 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 PGK2P07205 417 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 GTF2A2P52657 109 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 GALNT17Q6IS24 598 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 SAPCD2Q86UD0 394 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 KRI1Q8N9T8 703 aaKnown RBP11.58□□□□□ -0.56
NEK9-205ENST00000555405 EPSTI1Q96J88 318 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 CSRNP2Q9H175 543 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 EFCC1Q9HA90 598 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 TXNRD2Q9NNW7 524 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 AGTPBP1Q9UPW5 1226 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 SYCE3A1L190 88 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 NEMFO60524 1076 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 ARHGAP4P98171 946 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 PABPC4Q13310 644 aaKnown RBP eCLIP11.58□□□□□ -0.56
NEK9-205ENST00000555405 ARHGEF16Q5VV41 709 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 RMDN3Q96TC7 470 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 POLR3EQ9NVU0 708 aa11.58□□□□□ -0.56
NEK9-205ENST00000555405 TESPA1A2RU30 521 aaPredicted RBP11.57□□□□□ -0.56
NEK9-205ENST00000555405 OPLAHO14841 1288 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 TOMM70O94826 608 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 YEATS4O95619 227 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 TRAF1Q13077 416 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 TAF1CQ15572 869 aaPredicted RBP11.57□□□□□ -0.56
NEK9-205ENST00000555405 DTHD1Q6ZMT9 781 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 TNFRSF25Q93038 417 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 DDX25Q9UHL0 483 aaKnown RBP11.57□□□□□ -0.56
NEK9-205ENST00000555405 ABCB11O95342 1321 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 hCG_1984214I3L0E3 225 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 SLC37A4O43826 429 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 KINO60870 393 aaKnown RBP11.57□□□□□ -0.56
NEK9-205ENST00000555405 ERCC3P19447 782 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 CNTN2Q02246 1040 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 MAP3K11Q16584 847 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 CALCRLQ16602 461 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 SKOR2Q2VWA4 1001 aaPredicted RBP11.57□□□□□ -0.56
NEK9-205ENST00000555405 ZNF713Q8N859 430 aaPredicted RBP11.57□□□□□ -0.56
NEK9-205ENST00000555405 TMEM63CQ9P1W3 806 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 SYNPO2Q9UMS6 1093 aa11.57□□□□□ -0.56
NEK9-205ENST00000555405 SSBP05455 408 aaKnown RBP eCLIP11.56□□□□□ -0.56
NEK9-205ENST00000555405 NDUFA8P51970 172 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 MRPS27Q92552 414 aaKnown RBP11.56□□□□□ -0.56
NEK9-205ENST00000555405 DHX58Q96C10 678 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 SPATC1LQ9H0A9 340 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 GOLPH3LQ9H4A5 285 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 MBD3O95983 291 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 PTPAQ15257 358 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 SH3D19Q5HYK7 790 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 PROCA1Q8NCQ7 364 aaPredicted RBP11.56□□□□□ -0.56
NEK9-205ENST00000555405 C12orf42Q96LP6 360 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.56□□□□□ -0.56
NEK9-205ENST00000555405 COL20A1Q9P218 1284 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 ZNF214Q9UL59 606 aaPredicted RBP11.56□□□□□ -0.56
NEK9-205ENST00000555405 TMEM88BA6NKF7 163 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 BIN1O00499 593 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 AOC2O75106 756 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 AFMP43652 599 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 FKBP1BP68106 108 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 MCF2L2Q86YR7 1114 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 PTPN18Q99952 460 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 MOV10L1Q9BXT6 1211 aaKnown RBP11.56□□□□□ -0.56
NEK9-205ENST00000555405 KCNH4Q9UQ05 1017 aa11.56□□□□□ -0.56
NEK9-205ENST00000555405 CEP350Q5VT06 3117 aa11.55□□□□□ -0.56
NEK9-205ENST00000555405 ESYT2A0FGR8 921 aa11.55□□□□□ -0.56
NEK9-205ENST00000555405 POLR2DO15514 142 aaKnown RBP11.55□□□□□ -0.56
NEK9-205ENST00000555405 UBA7P41226 1012 aa11.55□□□□□ -0.56
NEK9-205ENST00000555405 SYKP43405 635 aa11.55□□□□□ -0.56
NEK9-205ENST00000555405 NASPP49321 788 aaPredicted RBP11.55□□□□□ -0.56
NEK9-205ENST00000555405 PLA2G4DQ86XP0 818 aa11.55□□□□□ -0.56
NEK9-205ENST00000555405 RNF214Q8ND24 703 aa11.55□□□□□ -0.56
NEK9-205ENST00000555405 IL31RAQ8NI17 732 aa11.55□□□□□ -0.56
NEK9-205ENST00000555405 PORCNQ9H237 461 aa11.55□□□□□ -0.56
NEK9-205ENST00000555405 ACAD9Q9H845 621 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms