RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 MTG1Q9BT17 334 aaPredicted RBP11.53□□□□□ -0.56
SCFD1-215ENST00000555259 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.53□□□□□ -0.563e-9■■□□□ 13.6
SCFD1-215ENST00000555259 MKNK2Q9HBH9 465 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 PAG1Q9NWQ8 432 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 MTUS1Q9ULD2 1270 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 POTEB3A0JP26 581 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 GRXCR2A6NFK2 248 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 MYL3P08590 195 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 BMP3P12645 472 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 CPT1AP50416 773 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 BFSP2Q13515 415 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 NBPF20Q3BBV1 942 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 ZKSCAN2Q63HK3 967 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 POTEBQ6S5H4 581 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 RPAP2Q8IXW5 612 aaPredicted RBP11.52□□□□□ -0.57
SCFD1-215ENST00000555259 LRRC47Q8N1G4 583 aaKnown RBP11.52□□□□□ -0.57
SCFD1-215ENST00000555259 GMCL1P1Q8NEA9 526 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 PPP1R13LQ8WUF5 828 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 TRERF1Q96PN7 1200 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 ZBED2Q9BTP6 218 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 CYP39A1Q9NYL5 469 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 SYNPO2Q9UMS6 1093 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 SCN10AQ9Y5Y9 1956 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 MYH4Q9Y623 1939 aa11.52□□□□□ -0.57
SCFD1-215ENST00000555259 ALAS1P13196 640 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 STAT2P52630 851 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 ERVK-21P61565 698 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 DEFB103AP81534 67 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 UBE3CQ15386 1083 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 TKFCQ3LXA3 575 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 SBK1Q52WX2 424 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 NFRKBQ6P4R8 1299 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 CLASRPQ8N2M8 674 aaKnown RBP11.51□□□□□ -0.57
SCFD1-215ENST00000555259 MORC4Q8TE76 937 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 CEP95Q96GE4 821 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 TGS1Q96RS0 853 aaKnown RBP11.51□□□□□ -0.57
SCFD1-215ENST00000555259 WDR11Q9BZH6 1224 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 GPHNQ9NQX3 736 aaPredicted RBP11.51□□□□□ -0.57
SCFD1-215ENST00000555259 MTMR4Q9NYA4 1195 aa11.51□□□□□ -0.57
SCFD1-215ENST00000555259 LINC01553A4QN01 128 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 ZNF316A6NFI3 1004 aaPredicted RBP11.5□□□□□ -0.57
SCFD1-215ENST00000555259 TMEM232C9JQI7 657 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 GJB5O95377 273 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 IFIT2P09913 472 aaKnown RBP11.5□□□□□ -0.57
SCFD1-215ENST00000555259 LRRFIP1Q32MZ4 808 aaKnown RBP11.5□□□□□ -0.57
SCFD1-215ENST00000555259 PUS10Q3MIT2 529 aaKnown RBP11.5□□□□□ -0.57
SCFD1-215ENST00000555259 HSP90AB4PQ58FF6 505 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 MUM1L1Q5H9M0 696 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 SLFN13Q68D06 897 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 HFE2Q6ZVN8 426 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 ITPRIPQ8IWB1 547 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 NEK9Q8TD19 979 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 ANKS1AQ92625 1134 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 PURBQ96QR8 312 aaKnown RBP11.5□□□□□ -0.57
SCFD1-215ENST00000555259 RAD9AQ99638 391 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 PUS7LQ9H0K6 701 aaKnown RBP11.5□□□□□ -0.57
SCFD1-215ENST00000555259 BOLA2Q9H3K6 86 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 MYO15AQ9UKN7 3530 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 H3BQ06 376 aaPredicted RBP11.5□□□□□ -0.57
SCFD1-215ENST00000555259 TTLL1O95922 423 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 PTPN11Q06124 597 aaPredicted RBP11.5□□□□□ -0.57
SCFD1-215ENST00000555259 GPNMBQ14956 572 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 OR6J1Q8NGC5 347 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 ISY1Q9ULR0 285 aaKnown RBP11.5□□□□□ -0.57
SCFD1-215ENST00000555259 NOD1Q9Y239 953 aa11.5□□□□□ -0.57
SCFD1-215ENST00000555259 LCTP09848 1927 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 RBM47A0AV96 593 aaKnown RBP11.49□□□□□ -0.57
SCFD1-215ENST00000555259 MINDY4BA8MYZ0 360 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 PRDM1O75626 825 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 ZP2Q05996 745 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 IKQ13123 557 aaPredicted RBP11.49□□□□□ -0.57
SCFD1-215ENST00000555259 BRDTQ58F21 947 aaPredicted RBP11.49□□□□□ -0.57
SCFD1-215ENST00000555259 NSMFQ6X4W1 530 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 FAM160B2Q86V87 743 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 FTSJ3Q8IY81 847 aaKnown RBP11.49□□□□□ -0.57
SCFD1-215ENST00000555259 CAGE1Q8TC20 777 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 AFAP1L1Q8TED9 768 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 CHURC1Q8WUH1 139 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 STAG1Q8WVM7 1258 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 PHOX2BQ99453 314 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 HAUS7Q99871 368 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 RNF216Q9NWF9 866 aaPredicted RBP11.49□□□□□ -0.57
SCFD1-215ENST00000555259 SIP14410 1827 aa11.49□□□□□ -0.57
SCFD1-215ENST00000555259 A6NJR5 290 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 GSG1L2A8MUP6 293 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 KPNA6O60684 536 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 RLBP1P12271 317 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 ATP5JP18859 108 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 ALDH5A1P51649 535 aaPredicted RBP11.48□□□□□ -0.57
SCFD1-215ENST00000555259 SNAP25P60880 206 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 CNKSR3Q6P9H4 555 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 GIMAP6Q6P9H5 292 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 ZNF444Q8N0Y2 327 aaPredicted RBP11.48□□□□□ -0.57
SCFD1-215ENST00000555259 KIF1BPQ96EK5 621 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 GMCL1Q96IK5 515 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 MFSD14AQ96MC6 490 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 CTAGE1Q96RT6 745 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 STRBPQ96SI9 672 aaKnown RBP11.48□□□□□ -0.57
SCFD1-215ENST00000555259 BCL11AQ9H165 835 aa11.48□□□□□ -0.57
SCFD1-215ENST00000555259 TRIP12Q14669 1992 aaPredicted RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms