RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 CEP95Q96GE4 821 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 WDR18Q9BV38 432 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 KANSL2Q9H9L4 492 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 TMEM39AQ9NV64 488 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 GPR37L1O60883 481 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 HOXC6P09630 235 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 GNAQP50148 359 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 TROAPQ12815 778 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 RAB11FIP4Q86YS3 637 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 TRIM22Q8IYM9 498 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 TMEM47Q9BQJ4 181 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 MYL10Q9BUA6 226 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 TSPYL2Q9H2G4 693 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-208ENST00000553868 NKX2-4Q9H2Z4 354 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 GINM1Q9NU53 330 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 GBF1Q92538 1859 aa16.73■□□□□ 0.27
SHMT2-208ENST00000553868 WDFY4Q6ZS81 3184 aa16.72■□□□□ 0.27
SHMT2-208ENST00000553868 IFNAR1P17181 557 aa16.72■□□□□ 0.27
SHMT2-208ENST00000553868 RXRAP19793 462 aa16.72■□□□□ 0.27
SHMT2-208ENST00000553868 GRB14Q14449 540 aa16.72■□□□□ 0.27
SHMT2-208ENST00000553868 SKIV2LQ15477 1246 aaKnown RBP16.72■□□□□ 0.27
SHMT2-208ENST00000553868 CCDC144CPQ8IYA2 1237 aa16.72■□□□□ 0.27
SHMT2-208ENST00000553868 WASF1Q92558 559 aa16.72■□□□□ 0.27
SHMT2-208ENST00000553868 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.72■□□□□ 0.275e-8■■■□□ 18.8
SHMT2-208ENST00000553868 EMILIN3Q9NT22 766 aa16.72■□□□□ 0.27
SHMT2-208ENST00000553868 NYAP2Q9P242 653 aa16.72■□□□□ 0.27
SHMT2-208ENST00000553868 SIPA1L1O43166 1804 aa16.72■□□□□ 0.27
SHMT2-208ENST00000553868 STK36Q9NRP7 1315 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 MYH8P13535 1937 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 SEPT4O43236 478 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 JAK2O60674 1132 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 CTDNEP1O95476 244 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 ADD1P35611 737 aaKnown RBP16.71■□□□□ 0.27
SHMT2-208ENST00000553868 SSRP1Q08945 709 aaKnown RBP16.71■□□□□ 0.27
SHMT2-208ENST00000553868 FAAP100Q0VG06 881 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 RAB3GAP1Q15042 981 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 TMEM240Q5SV17 173 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 LARP1BQ659C4 914 aaKnown RBP16.71■□□□□ 0.27
SHMT2-208ENST00000553868 RGS22Q8NE09 1264 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 LZTS2Q9BRK4 669 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 ORC3Q9UBD5 711 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-208ENST00000553868 SYNPO2Q9UMS6 1093 aa16.71■□□□□ 0.27
SHMT2-208ENST00000553868 USP17L10C9JJH3 530 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 STX6O43752 255 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 ACRP10323 421 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 CDC27P30260 824 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 AKAP17AQ02040 695 aaKnown RBP16.7■□□□□ 0.26
SHMT2-208ENST00000553868 ICA1Q05084 483 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 GRM4Q14833 912 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 RASIP1Q5U651 963 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 DDX11Q96FC9 970 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 FAM217BQ9NTX9 383 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-208ENST00000553868 BTBD7Q9P203 1132 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 CLIP2Q9UDT6 1046 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 PHF24Q9UPV7 400 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 YBX2Q9Y2T7 364 aaKnown RBP16.7■□□□□ 0.26
SHMT2-208ENST00000553868 RABGAP1Q9Y3P9 1069 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 CACNA1AO00555 2505 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 PRRC2BQ5JSZ5 2229 aaKnown RBP16.7■□□□□ 0.26
SHMT2-208ENST00000553868 SMCHD1A6NHR9 2005 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 LRRC37A2A6NM11 1700 aa16.7■□□□□ 0.26
SHMT2-208ENST00000553868 C19orf81C9J6K1 198 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 H3BQV1 296 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 GDF11O95390 407 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 GH2P01242 217 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 ASNSP08243 561 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 SYT1P21579 422 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 CCNA1P78396 465 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 ZYXQ15942 572 aaKnown RBP16.69■□□□□ 0.26
SHMT2-208ENST00000553868 AAK1Q2M2I8 961 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 TMTC3Q6ZXV5 915 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 GTF3C2Q8WUA4 911 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-208ENST00000553868 MKL1Q969V6 931 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 ARHGEF10LQ9HCE6 1279 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 IVNS1ABPQ9Y6Y0 642 aa16.69■□□□□ 0.26
SHMT2-208ENST00000553868 TLL1O43897 1013 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 BRD1O95696 1058 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 PGK1P00558 417 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 PARP1P09874 1014 aaKnown RBP16.68■□□□□ 0.26
SHMT2-208ENST00000553868 SEPT2Q15019 361 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 NTRK3Q16288 839 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 ZNF365Q70YC5 407 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 DPP9Q86TI2 863 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 SLC26A6Q9BXS9 759 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 RNF26Q9BY78 433 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-208ENST00000553868 SH2D4AQ9H788 454 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 CD320Q9NPF0 282 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 MSRAQ9UJ68 235 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 ZBTB21Q9ULJ3 1066 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 ATP6V1DQ9Y5K8 247 aa16.68■□□□□ 0.26
SHMT2-208ENST00000553868 GREB1LQ9C091 1923 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-208ENST00000553868 A0A1W2PQ45 241 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-208ENST00000553868 A0A1W2PQY0 241 aa16.67■□□□□ 0.26
SHMT2-208ENST00000553868 VPS37CA5D8V6 355 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-208ENST00000553868 DEXIO95424 95 aa16.67■□□□□ 0.26
SHMT2-208ENST00000553868 TIMP1P01033 207 aa16.67■□□□□ 0.26
SHMT2-208ENST00000553868 ZSCAN22P10073 491 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-208ENST00000553868 EEF2P13639 858 aaKnown RBP16.67■□□□□ 0.26
SHMT2-208ENST00000553868 CSF2RAP15509 400 aa16.67■□□□□ 0.26
SHMT2-208ENST00000553868 ADORA2AP29274 412 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms