RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 KLRF2D3W0D1 207 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 GTPBP6O43824 516 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-207ENST00000553837 ONECUT3O60422 494 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-207ENST00000553837 SYF2O95926 243 aaKnown RBP13.68□□□□□ -0.22
SHMT2-207ENST00000553837 ADRA2BP18089 450 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 ATP2B4P23634 1241 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 RRAGBQ5VZM2 374 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 RAD9BQ6WBX8 426 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 DAGLBQ8NCG7 672 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 CCDC148Q8NFR7 591 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 PLEKHA4Q9H4M7 779 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 MYO1AQ9UBC5 1043 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 TTF2Q9UNY4 1162 aaKnown RBP13.68□□□□□ -0.22
SHMT2-207ENST00000553837 GDAQ9Y2T3 454 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 CCDC194A0A1B0GVG4 234 aa13.67□□□□□ -0.22
SHMT2-207ENST00000553837 CCDC189A1A4V9 331 aa13.67□□□□□ -0.22
SHMT2-207ENST00000553837 PRPF6O94906 941 aaKnown RBP13.67□□□□□ -0.22
SHMT2-207ENST00000553837 LONP1P36776 959 aaKnown RBP13.67□□□□□ -0.22
SHMT2-207ENST00000553837 GNAQP50148 359 aa13.67□□□□□ -0.22
SHMT2-207ENST00000553837 RBL2Q08999 1139 aa13.67□□□□□ -0.22
SHMT2-207ENST00000553837 AMOTL1Q8IY63 956 aa13.67□□□□□ -0.22
SHMT2-207ENST00000553837 NEDD1Q8NHV4 660 aa13.67□□□□□ -0.22
SHMT2-207ENST00000553837 CEP95Q96GE4 821 aa13.67□□□□□ -0.22
SHMT2-207ENST00000553837 PLIN2Q99541 437 aa13.67□□□□□ -0.22
SHMT2-207ENST00000553837 RGS17Q9UGC6 210 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-207ENST00000553837 MAPK8IP1Q9UQF2 711 aa13.67□□□□□ -0.22
SHMT2-207ENST00000553837 AFF2P51816 1311 aa13.67□□□□□ -0.22
SHMT2-207ENST00000553837 A0A0U1RQJ8 604 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 EBAG9O00559 213 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 SLC35F6Q8N357 371 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 ATRIPQ8WXE1 791 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 RBM17Q96I25 401 aaKnown RBP13.66□□□□□ -0.22
SHMT2-207ENST00000553837 LTBP1Q14766 1721 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 MYH1P12882 1939 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 SHOX2O60902 331 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-207ENST00000553837 RPN1P04843 607 aaKnown RBP13.66□□□□□ -0.22
SHMT2-207ENST00000553837 HOXA10P31260 410 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-207ENST00000553837 CCT6AP40227 531 aaKnown RBP13.66□□□□□ -0.22
SHMT2-207ENST00000553837 MNAT1P51948 309 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 CCDC178Q5BJE1 867 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 IGSF22Q8N9C0 903 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 CPLX3Q8WVH0 158 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 FAM163AQ96GL9 167 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-207ENST00000553837 DISC1Q9NRI5 854 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 GAKO14976 1311 aa13.66□□□□□ -0.22
SHMT2-207ENST00000553837 RNF225M0QZC1 329 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-207ENST00000553837 POLRMTO00411 1230 aaKnown RBP13.65□□□□□ -0.22
SHMT2-207ENST00000553837 STAT6P42226 847 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 PRCPP42785 496 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 NT5C2P49902 561 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 KRT31Q15323 416 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 LRCH2Q5VUJ6 765 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 ZNF772Q68DY9 489 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-207ENST00000553837 CCDC51Q96ER9 411 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 SPZ1Q9BXG8 430 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 ZMYND12Q9H0C1 365 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 MYO6Q9UM54 1294 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 USP17L5A8MUK1 530 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 KLRC4O43908 158 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 HNRNPH1P31943 449 aaKnown RBP13.65□□□□□ -0.22
SHMT2-207ENST00000553837 ZNF658Q5TYW1 1059 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-207ENST00000553837 DTHD1Q6ZMT9 781 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 POTEDQ86YR6 584 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 CLEC10AQ8IUN9 316 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 NELFBQ8WX92 580 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 MXD3Q9BW11 206 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 UBA5Q9GZZ9 404 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 VAT1LQ9HCJ6 419 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 RWDD2AQ9UIY3 292 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 HPCAL4Q9UM19 191 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 DAGLAQ9Y4D2 1042 aa13.65□□□□□ -0.22
SHMT2-207ENST00000553837 TRIM49BA6NDI0 452 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 C6orf229H3BNL8 230 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 RIMBP2O15034 1052 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 BBOX1O75936 387 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 GYPCP04921 128 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 PARP1P09874 1014 aaKnown RBP13.64□□□□□ -0.23
SHMT2-207ENST00000553837 NOVP48745 357 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 LIG3P49916 1009 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 FXR1P51114 621 aaKnown RBP eCLIP13.64□□□□□ -0.23
SHMT2-207ENST00000553837 PMS1P54277 932 aaKnown RBP13.64□□□□□ -0.23
SHMT2-207ENST00000553837 GTF2IP78347 998 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 SETQ01105 290 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-207ENST00000553837 STIM1Q13586 685 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 MEX3CQ5U5Q3 659 aaKnown RBP13.64□□□□□ -0.23
SHMT2-207ENST00000553837 IRF2BP1Q8IU81 584 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 PIGSQ96S52 555 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 LIMA1Q9UHB6 759 aaKnown RBP13.64□□□□□ -0.23
SHMT2-207ENST00000553837 FAM169AQ9Y6X4 670 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 CASP14P31944 242 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 USP14P54578 494 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 NAPAP54920 295 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 PAK1Q13153 545 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 SKIDA1Q1XH10 827 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 CERS5Q8N5B7 392 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 NOA1Q8NC60 698 aaKnown RBP13.64□□□□□ -0.23
SHMT2-207ENST00000553837 FAM76AQ8TAV0 307 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 VPS16Q9H269 839 aa13.64□□□□□ -0.23
SHMT2-207ENST00000553837 DDX4Q9NQI0 724 aaKnown RBP13.64□□□□□ -0.23
SHMT2-207ENST00000553837 TAB2Q9NYJ8 693 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms