RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 FERMT2Q96AC1 680 aa6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 GPR101Q96P66 508 aaPredicted RBP6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 NAT10Q9H0A0 1025 aaKnown RBP6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 TMX4Q9H1E5 349 aaPredicted RBP6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 KAT14Q9H8E8 782 aa6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 BRMS1Q9HCU9 246 aa6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 MAD2L2Q9UI95 211 aa6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 FBXO2Q9UK22 296 aaPredicted RBP6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 KCNJ14Q9UNX9 436 aa6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 JAG2Q9Y219 1238 aa6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 DAGLAQ9Y4D2 1042 aa6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 FLT1P17948 1338 aa6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 PLIN4Q96Q06 1357 aa6.89□□□□□ -1.31
VIPAS39-204ENST00000553576 KIF13BQ9NQT8 1826 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 GOLGA6L6A8MZA4 724 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 H0YIN7 160 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 M0R2N6 131 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 CELA2BP08218 269 aaPredicted RBP6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 GJA5P36382 358 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 SARSP49591 514 aaKnown RBP6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 SRSF11Q05519 484 aaKnown RBP6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 CBLBQ13191 982 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 SLC15A2Q16348 729 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 CT47A1Q5JQC4 288 aaPredicted RBP6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 NT5DC1Q5TFE4 455 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 STRIP1Q5VSL9 837 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 DPP8Q6V1X1 898 aaPredicted RBP6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 KRBA2Q6ZNG9 492 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 Q6ZVU0 165 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 LUZP1Q86V48 1076 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 DHX40Q8IX18 779 aaKnown RBP6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 CCDC82Q8N4S0 544 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 CERS5Q8N5B7 392 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 C7orf43Q8WVR3 580 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 CNKSR1Q969H4 720 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 DYNLL2Q96FJ2 89 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 MRFAP1L1Q96HT8 127 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 CAMKK2Q96RR4 588 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 TMEM47Q9BQJ4 181 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 SPZ1Q9BXG8 430 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 DNAJC25Q9H1X3 360 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 CABP5Q9NP86 173 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 FAM13BQ9NYF5 915 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 SWAP70Q9UH65 585 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 HOOK1Q9UJC3 728 aaKnown RBP6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 KCNH3Q9ULD8 1083 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 PCDHB6Q9Y5E3 794 aa6.88□□□□□ -1.31
VIPAS39-204ENST00000553576 SIPA1L1O43166 1804 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 SNED1Q8TER0 1413 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 IGKV6D-41A0A0C4DH26 115 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 USP17L3A6NCW0 530 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 USP17L4A6NCW7 530 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 TRIM75PA6NK02 468 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 SMTNL1A8MU46 457 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 IKBKBO14920 756 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 MYO1BO43795 1136 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 OFD1O75665 1012 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 TOP1P11387 765 aaKnown RBP6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 ZNF75DP51815 510 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 TERF1P54274 439 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 ATP2C1P98194 919 aaPredicted RBP6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 ARL6IP4Q66PJ3 421 aaKnown RBP6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 APOBEC3HQ6NTF7 200 aaKnown RBP6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 C11orf57Q6ZUT1 292 aaPredicted RBP6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 USP17L1Q7RTZ2 530 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 MAPKAPK5Q8IW41 473 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 CEP57L1Q8IYX8 460 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 SPATA20Q8TB22 786 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 ZDHHC15Q96MV8 337 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 CLIC6Q96NY7 704 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 EHD4Q9H223 541 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 VPS54Q9P1Q0 977 aa6.87□□□□□ -1.31
VIPAS39-204ENST00000553576 BECN2A8MW95 431 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 GOLGA6L19H0YKK7 550 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 hCG_1984214I3L0E3 225 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 CYTH3O43739 400 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 PTMAP06454 111 aaKnown RBP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 SNHG28P0DPA3 235 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 NLRP5P59047 1200 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 SEMA3FQ13275 785 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 LONRF3Q496Y0 759 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 EARS2Q5JPH6 523 aaKnown RBP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 RSBN1LQ6PCB5 846 aaPredicted RBP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 METTL16Q86W50 562 aaKnown RBP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 C2CD5Q86YS7 1000 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 FOXP4Q8IVH2 680 aaPredicted RBP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 BLIDQ8IZY5 108 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 STAG2Q8N3U4 1231 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 ZNF713Q8N859 430 aaPredicted RBP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 C4orf32Q8N8J7 132 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 TRIML1Q8N9V2 468 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 SUPT20HQ8NEM7 779 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 CCDC148Q8NFR7 591 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 TEKT1Q969V4 418 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 CCDC17Q96LX7 622 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 PSMG3-AS1Q96PY0 264 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 PYM1Q9BRP8 204 aaKnown RBP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 IDI2Q9BXS1 227 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 KRTAP9-2Q9BYQ4 174 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms