RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CSRNP1Q96S65 589 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 OPA1O60313 960 aa17.33■□□□□ 0.37
CUX1-211ENST00000546411 EEF2P13639 858 aaKnown RBP17.33■□□□□ 0.37
CUX1-211ENST00000546411 GUCY2FP51841 1108 aa17.33■□□□□ 0.37
CUX1-211ENST00000546411 TNNC1P63316 161 aa17.33■□□□□ 0.37
CUX1-211ENST00000546411 ABCB5Q2M3G0 1257 aa17.33■□□□□ 0.37
CUX1-211ENST00000546411 NBPF11Q86T75 865 aa17.33■□□□□ 0.37
CUX1-211ENST00000546411 UBLCP1Q8WVY7 318 aaPredicted RBP17.33■□□□□ 0.37
CUX1-211ENST00000546411 KANSL2Q9H9L4 492 aa17.33■□□□□ 0.37
CUX1-211ENST00000546411 NDUFA10O95299 355 aa17.33■□□□□ 0.36
CUX1-211ENST00000546411 TUBBP07437 444 aa17.33■□□□□ 0.36
CUX1-211ENST00000546411 DPH6Q7L8W6 267 aa17.33■□□□□ 0.36
CUX1-211ENST00000546411 FAM76AQ8TAV0 307 aa17.33■□□□□ 0.36
CUX1-211ENST00000546411 EEF1GP26641 437 aaKnown RBP17.33■□□□□ 0.36
CUX1-211ENST00000546411 GYS2P54840 703 aa17.33■□□□□ 0.36
CUX1-211ENST00000546411 GLT8D2Q9H1C3 349 aa17.33■□□□□ 0.36
CUX1-211ENST00000546411 CCNE1P24864 410 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 LONRF2Q1L5Z9 754 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 ASPRV1Q53RT3 343 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 ADGRA1Q86SQ6 560 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 RABGGTAQ92696 567 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 TAOK3Q9H2K8 898 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 PHLPP2Q6ZVD8 1323 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 GOLGA6BA6NDN3 693 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 CLIC2O15247 247 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 WHAMMP3Q1A5X7 153 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 INTS5Q6P9B9 1019 aaKnown RBP17.32■□□□□ 0.36
CUX1-211ENST00000546411 BPIFA3Q9BQP9 254 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 OVOS2A0A0G2JMS6 1433 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 CALUO43852 315 aaPredicted RBP17.32■□□□□ 0.36
CUX1-211ENST00000546411 KRT5P13647 590 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 NR2F2P24468 414 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 PDE6BP35913 854 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 EHHADHQ08426 723 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 BIRC3Q13489 604 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 ARL6IP4Q66PJ3 421 aaKnown RBP17.32■□□□□ 0.36
CUX1-211ENST00000546411 U2AF1L4Q8WU68 220 aaKnown RBP17.32■□□□□ 0.36
CUX1-211ENST00000546411 DDX41Q9UJV9 622 aaKnown RBP17.32■□□□□ 0.36
CUX1-211ENST00000546411 SRGAP2O75044 1071 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 RAD17O75943 681 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 ALAS1P13196 640 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 MAP2K1Q02750 393 aaPredicted RBP17.32■□□□□ 0.36
CUX1-211ENST00000546411 LLGL1Q15334 1064 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 GPATCH4Q5T3I0 446 aaKnown RBP17.32■□□□□ 0.36
CUX1-211ENST00000546411 TXNRD3Q86VQ6 643 aa17.32■□□□□ 0.36
CUX1-211ENST00000546411 DHTKD1Q96HY7 919 aaPredicted RBP17.32■□□□□ 0.36
CUX1-211ENST00000546411 IFT172Q9UG01 1749 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 MMP10P09238 476 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 NLGN1Q8N2Q7 840 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 TRIM58Q8NG06 486 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 SFI1A8K8P3 1242 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 KCNK3O14649 394 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 GPSM2P81274 684 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 TUBB2AQ13885 445 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 C12orf60Q5U649 245 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 ILDR1Q86SU0 546 aaPredicted RBP17.31■□□□□ 0.36
CUX1-211ENST00000546411 POTEDQ86YR6 584 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 AK8Q96MA6 479 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 TUBB2BQ9BVA1 445 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 AMNQ9BXJ7 453 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 GOLGA6CA6NDK9 693 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 GOLGA6DP0CG33 693 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 RPS6KA1Q15418 735 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 NAA35Q5VZE5 725 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 CCDC50Q8IVM0 306 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 GOLGA6AQ9NYA3 693 aa17.31■□□□□ 0.36
CUX1-211ENST00000546411 TDP2O95551 362 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 PEX26Q7Z412 305 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 AFAP1L1Q8TED9 768 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 ZCCHC17Q9NP64 241 aaKnown RBP17.3■□□□□ 0.36
CUX1-211ENST00000546411 SPOPO43791 374 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 FCER1AP12319 257 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 PLCB3Q01970 1234 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 BRD3Q15059 726 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 CFAP221Q4G0U5 840 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 MIGA2Q7L4E1 593 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 ZNF512BQ96KM6 892 aaPredicted RBP17.3■□□□□ 0.36
CUX1-211ENST00000546411 SLC4A9Q96Q91 983 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 TUBE1Q9UJT0 475 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 LAD1O00515 517 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 MYCNP04198 464 aaPredicted RBP17.3■□□□□ 0.36
CUX1-211ENST00000546411 ATP2C1P98194 919 aaPredicted RBP17.3■□□□□ 0.36
CUX1-211ENST00000546411 PTPAQ15257 358 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 C3orf67Q6ZVT6 689 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 PANX2Q96RD6 677 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 CTTNBP2NLQ9P2B4 639 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 MYO1AQ9UBC5 1043 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 ATP6V0A2Q9Y487 856 aa17.3■□□□□ 0.36
CUX1-211ENST00000546411 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.3■□□□□ 0.36
CUX1-211ENST00000546411 TTC26A0AVF1 554 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 EIF4A3P38919 411 aaKnown RBP17.29■□□□□ 0.36
CUX1-211ENST00000546411 SF3B3Q15393 1217 aaKnown RBP17.29■□□□□ 0.36
CUX1-211ENST00000546411 VWA3BQ502W6 1294 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 FAM178BQ8IXR5 827 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 MB21D1Q8N884 522 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 PHF20Q9BVI0 1012 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 KDM3AQ9Y4C1 1321 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 FKBP3Q00688 224 aaKnown RBP17.29■□□□□ 0.36
CUX1-211ENST00000546411 DAAM2Q86T65 1068 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 NHEJ1Q9H9Q4 299 aaPredicted RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms