RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 MTMR10Q9NXD2 777 aa18.3■□□□□ 0.52
VPS33A-206ENST00000542310 STXBP5LQ9Y2K9 1186 aa18.3■□□□□ 0.52
VPS33A-206ENST00000542310 KIAA1217Q5T5P2 1943 aa18.29■□□□□ 0.52
VPS33A-206ENST00000542310 RBM47A0AV96 593 aaKnown RBP18.29■□□□□ 0.52
VPS33A-206ENST00000542310 TLR3O15455 904 aaKnown RBP18.29■□□□□ 0.52
VPS33A-206ENST00000542310 EDNRBP24530 442 aa18.29■□□□□ 0.52
VPS33A-206ENST00000542310 RPS6P62753 249 aaKnown RBP18.29■□□□□ 0.52
VPS33A-206ENST00000542310 DUSP28Q4G0W2 176 aa18.29■□□□□ 0.52
VPS33A-206ENST00000542310 Q7L0L9 218 aa18.29■□□□□ 0.52
VPS33A-206ENST00000542310 FAM126BQ8IXS8 530 aa18.29■□□□□ 0.52
VPS33A-206ENST00000542310 SLC43A3Q8NBI5 491 aa18.29■□□□□ 0.52
VPS33A-206ENST00000542310 UBAC1Q9BSL1 405 aa18.29■□□□□ 0.52
VPS33A-206ENST00000542310 ZSWIM5Q9P217 1185 aa18.29■□□□□ 0.52
VPS33A-206ENST00000542310 ABCB11O95342 1321 aa18.28■□□□□ 0.52
VPS33A-206ENST00000542310 SCN10AQ9Y5Y9 1956 aa18.28■□□□□ 0.52
VPS33A-206ENST00000542310 B4DLN1 442 aa18.28■□□□□ 0.52
VPS33A-206ENST00000542310 TIMP1P01033 207 aa18.28■□□□□ 0.52
VPS33A-206ENST00000542310 GOLGA8HP0CJ92 632 aa18.28■□□□□ 0.52
VPS33A-206ENST00000542310 MRPL12P52815 198 aaKnown RBP18.28■□□□□ 0.52
VPS33A-206ENST00000542310 SMAD3P84022 425 aaKnown RBP18.28■□□□□ 0.52
VPS33A-206ENST00000542310 BEX3Q00994 111 aa18.28■□□□□ 0.52
VPS33A-206ENST00000542310 CDC37Q16543 378 aaPredicted RBP18.28■□□□□ 0.52
VPS33A-206ENST00000542310 EEPD1Q7L9B9 569 aa18.28■□□□□ 0.52
VPS33A-206ENST00000542310 PURBQ96QR8 312 aaKnown RBP18.28■□□□□ 0.52
VPS33A-206ENST00000542310 PDGFCQ9NRA1 345 aa18.28■□□□□ 0.52
VPS33A-206ENST00000542310 NKRFO15226 690 aaKnown RBP eCLIP18.27■□□□□ 0.52
VPS33A-206ENST00000542310 PARP1P09874 1014 aaKnown RBP18.27■□□□□ 0.52
VPS33A-206ENST00000542310 CALML3P27482 149 aa18.27■□□□□ 0.52
VPS33A-206ENST00000542310 IFIT1BQ5T764 474 aaKnown RBP18.27■□□□□ 0.52
VPS33A-206ENST00000542310 ZNF697Q5TEC3 545 aa18.27■□□□□ 0.52
VPS33A-206ENST00000542310 MFSD5Q6N075 450 aa18.27■□□□□ 0.52
VPS33A-206ENST00000542310 KIAA1211Q6ZU35 1233 aa18.27■□□□□ 0.52
VPS33A-206ENST00000542310 VTI1AQ96AJ9 217 aa18.27■□□□□ 0.52
VPS33A-206ENST00000542310 DDX49Q9Y6V7 483 aaKnown RBP18.27■□□□□ 0.52
VPS33A-206ENST00000542310 DYNC1LI2O43237 492 aaPredicted RBP18.26■□□□□ 0.51
VPS33A-206ENST00000542310 CD4P01730 458 aa18.26■□□□□ 0.51
VPS33A-206ENST00000542310 CHMLP26374 656 aa18.26■□□□□ 0.51
VPS33A-206ENST00000542310 PDE4DQ08499 809 aa18.26■□□□□ 0.51
VPS33A-206ENST00000542310 PPIGQ13427 754 aaKnown RBP eCLIP18.26■□□□□ 0.51
VPS33A-206ENST00000542310 USH1GQ495M9 461 aa18.26■□□□□ 0.51
VPS33A-206ENST00000542310 CXCL17Q6UXB2 119 aa18.26■□□□□ 0.51
VPS33A-206ENST00000542310 ADGRF4Q8IZF3 695 aa18.26■□□□□ 0.51
VPS33A-206ENST00000542310 RNPC3Q96LT9 517 aaKnown RBP18.26■□□□□ 0.51
VPS33A-206ENST00000542310 WDR11Q9BZH6 1224 aa18.26■□□□□ 0.51
VPS33A-206ENST00000542310 UBA5Q9GZZ9 404 aa18.26■□□□□ 0.51
VPS33A-206ENST00000542310 U3KPZ7 1027 aaPredicted RBP18.26■□□□□ 0.51
VPS33A-206ENST00000542310 TMEM265A0A087WTH1 108 aa18.25■□□□□ 0.51
VPS33A-206ENST00000542310 CPT1AP50416 773 aa18.25■□□□□ 0.51
VPS33A-206ENST00000542310 TRDNQ13061 729 aa18.25■□□□□ 0.51
VPS33A-206ENST00000542310 ITGA7Q13683 1181 aa18.25■□□□□ 0.51
VPS33A-206ENST00000542310 PPP2R5BQ15173 497 aa18.25■□□□□ 0.51
VPS33A-206ENST00000542310 SEC23AQ15436 765 aa18.25■□□□□ 0.51
VPS33A-206ENST00000542310 SCFD2Q8WU76 684 aa18.25■□□□□ 0.51
VPS33A-206ENST00000542310 POLR3EQ9NVU0 708 aa18.25■□□□□ 0.51
VPS33A-206ENST00000542310 EPHB4P54760 987 aa18.24■□□□□ 0.51
VPS33A-206ENST00000542310 QRICH1Q2TAL8 776 aa18.24■□□□□ 0.51
VPS33A-206ENST00000542310 MCF2L2Q86YR7 1114 aa18.24■□□□□ 0.51
VPS33A-206ENST00000542310 TMEM199Q8N511 208 aa18.24■□□□□ 0.51
VPS33A-206ENST00000542310 CPVLQ9H3G5 476 aa18.24■□□□□ 0.51
VPS33A-206ENST00000542310 TANC1Q9C0D5 1861 aa18.24■□□□□ 0.51
VPS33A-206ENST00000542310 SGSM2O43147 1006 aa18.23■□□□□ 0.51
VPS33A-206ENST00000542310 CYP21A2P08686 494 aa18.23■□□□□ 0.51
VPS33A-206ENST00000542310 BRDTQ58F21 947 aaPredicted RBP18.23■□□□□ 0.51
VPS33A-206ENST00000542310 FBXO11Q86XK2 927 aa18.23■□□□□ 0.51
VPS33A-206ENST00000542310 OR6J1Q8NGC5 347 aa18.23■□□□□ 0.51
VPS33A-206ENST00000542310 GUCD1Q96NT3 240 aa18.23■□□□□ 0.51
VPS33A-206ENST00000542310 MRPL11Q9Y3B7 192 aaKnown RBP18.23■□□□□ 0.51
VPS33A-206ENST00000542310 GRIN2DO15399 1336 aa18.23■□□□□ 0.51
VPS33A-206ENST00000542310 CDH23Q9H251 3354 aa18.22■□□□□ 0.51
VPS33A-206ENST00000542310 PTGS1P23219 599 aa18.22■□□□□ 0.51
VPS33A-206ENST00000542310 PURAQ00577 322 aaKnown RBP18.22■□□□□ 0.51
VPS33A-206ENST00000542310 GHRHRQ02643 423 aa18.22■□□□□ 0.51
VPS33A-206ENST00000542310 PSRC1Q6PGN9 363 aaPredicted RBP18.22■□□□□ 0.51
VPS33A-206ENST00000542310 CYB5R4Q7L1T6 521 aa18.22■□□□□ 0.51
VPS33A-206ENST00000542310 MTMR8Q96EF0 704 aa18.22■□□□□ 0.51
VPS33A-206ENST00000542310 JMJD4Q9H9V9 463 aa18.22■□□□□ 0.51
VPS33A-206ENST00000542310 DHX16O60231 1041 aaKnown RBP18.21■□□□□ 0.51
VPS33A-206ENST00000542310 KPNA6O60684 536 aa18.21■□□□□ 0.51
VPS33A-206ENST00000542310 IRX6P78412 446 aaPredicted RBP18.21■□□□□ 0.51
VPS33A-206ENST00000542310 PTH1RQ03431 593 aa18.21■□□□□ 0.51
VPS33A-206ENST00000542310 TTLL4Q14679 1199 aa18.21■□□□□ 0.51
VPS33A-206ENST00000542310 SART3Q15020 963 aaKnown RBP18.21■□□□□ 0.51
VPS33A-206ENST00000542310 TMEM63BQ5T3F8 832 aa18.21■□□□□ 0.51
VPS33A-206ENST00000542310 RALYLQ86SE5 291 aaKnown RBP18.21■□□□□ 0.51
VPS33A-206ENST00000542310 SAMD3Q8N6K7 520 aa18.21■□□□□ 0.51
VPS33A-206ENST00000542310 SYTL5Q8TDW5 730 aaPredicted RBP18.21■□□□□ 0.51
VPS33A-206ENST00000542310 NSUN6Q8TEA1 469 aaKnown RBP18.21■□□□□ 0.51
VPS33A-206ENST00000542310 IWS1Q96ST2 819 aa18.21■□□□□ 0.51
VPS33A-206ENST00000542310 AMNQ9BXJ7 453 aa18.21■□□□□ 0.51
VPS33A-206ENST00000542310 HIPK3Q9H422 1215 aa18.21■□□□□ 0.51
VPS33A-206ENST00000542310 ERICH2A1L162 156 aa18.2■□□□□ 0.5
VPS33A-206ENST00000542310 PALM3A6NDB9 673 aaPredicted RBP18.2■□□□□ 0.5
VPS33A-206ENST00000542310 KLRF2D3W0D1 207 aa18.2■□□□□ 0.5
VPS33A-206ENST00000542310 TRAF1Q13077 416 aa18.2■□□□□ 0.5
VPS33A-206ENST00000542310 NCOA7Q8NI08 942 aa18.2■□□□□ 0.5
VPS33A-206ENST00000542310 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.2■□□□□ 0.5
VPS33A-206ENST00000542310 MTG1Q9BT17 334 aaPredicted RBP18.2■□□□□ 0.5
VPS33A-206ENST00000542310 PPP1R12CQ9BZL4 782 aa18.2■□□□□ 0.5
VPS33A-206ENST00000542310 MAP3K20Q9NYL2 800 aaKnown RBP18.2■□□□□ 0.5
VPS33A-206ENST00000542310 MAD2L2Q9UI95 211 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms