RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 NYAP2Q9P242 653 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 PCDHA11Q9Y5I1 949 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 ATP2A1O14983 1001 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 CABYRO75952 493 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 CA3P07451 260 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 FGRP09769 529 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 PCP11498 1178 aaKnown RBP10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 RASA1P20936 1047 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 PTH1RQ03431 593 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 PDE4BQ07343 736 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 IKQ13123 557 aaPredicted RBP10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 TMEM67Q5HYA8 995 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 KRT40Q6A162 431 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 KIAA1211Q6ZU35 1233 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 ZNF444Q8N0Y2 327 aaPredicted RBP10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 MAP4K1Q92918 833 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 LRFN3Q9BTN0 628 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 NOC4LQ9BVI4 516 aaKnown RBP10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 WNT8AQ9H1J5 351 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 ACAD9Q9H845 621 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 SLC38A10Q9HBR0 1119 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 FEM1BQ9UK73 627 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 DDX49Q9Y6V7 483 aaKnown RBP10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 ASTN1O14525 1302 aa10.23□□□□□ -0.77
CLSTN3-212ENST00000541770 ASB14A6NK59 587 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 ZNF213O14771 459 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 PRDM1O75626 825 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 CYP2C9P11712 490 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 ALAS1P13196 640 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 SMPD1P17405 629 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 HOXD11P31277 338 aaPredicted RBP10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 NT5C2P49902 561 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 TTLL4Q14679 1199 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 IMMTQ16891 758 aaKnown RBP10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 TMEM31Q5JXX7 168 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 SLC43A3Q8NBI5 491 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 ARNTL2Q8WYA1 636 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 KATNBL1Q9H079 304 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 LSG1Q9H089 658 aaKnown RBP10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 PDGFCQ9NRA1 345 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 RNF146Q9NTX7 359 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 GNEQ9Y223 722 aaKnown RBP10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 MTCH2Q9Y6C9 303 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 U3KPZ7 1027 aaPredicted RBP10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 GRIN2DO15399 1336 aa10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 COL4A4P53420 1690 aaPredicted RBP10.22□□□□□ -0.77
CLSTN3-212ENST00000541770 SOWAHBA6NEL2 793 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 TMEM232C9JQI7 657 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 EPB41L2O43491 1005 aaKnown RBP10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 ORC4O43929 436 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 MYL3P08590 195 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 BMP3P12645 472 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 ACTN1P12814 892 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 FAM47CQ5HY64 1035 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 SLFN13Q68D06 897 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 FBXO16Q8IX29 292 aaPredicted RBP10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 FAM133AQ8N9E0 248 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 STAG1Q8WVM7 1258 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 CEP95Q96GE4 821 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 AGBL1Q96MI9 1066 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 TRERF1Q96PN7 1200 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 RNF41Q9H4P4 317 aaPredicted RBP10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 ANO2Q9NQ90 1003 aa10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 A1CFQ9NQ94 594 aaKnown RBP10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 TRMT13Q9NUP7 481 aaKnown RBP10.21□□□□□ -0.77
CLSTN3-212ENST00000541770 MUC3AQ02505 3323 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 FAM86C2PA6NEL3 165 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 EIF5BO60841 1220 aaKnown RBP10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 REC8O95072 547 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 TNKSO95271 1327 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 LCTP09848 1927 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 STAT2P52630 851 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 OAZ1P54368 228 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 CHMP4BP1P59074 171 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 SNAP25P60880 206 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 HAND2P61296 217 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 CTDSPL2Q05D32 466 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 TMEM63BQ5T3F8 832 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 TBC1D10CQ8IV04 446 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 PPP1R13LQ8WUF5 828 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 PLIN4Q96Q06 1357 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 SEZ6LQ9BYH1 1024 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 FTOQ9C0B1 505 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 TANC1Q9C0D5 1861 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 ALDH8A1Q9H2A2 487 aaPredicted RBP10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 GPHNQ9NQX3 736 aaPredicted RBP10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 COG5Q9UP83 839 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 MTMR7Q9Y216 660 aa10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 RBM8AQ9Y5S9 174 aaKnown RBP10.2□□□□□ -0.78
CLSTN3-212ENST00000541770 TTC28Q96AY4 2481 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 PTPRSQ13332 1948 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 EPOPA6NHQ4 379 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 KIF28PB7ZC32 967 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 TTLL1O95922 423 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 PFKMP08237 780 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 CYP21A2P08686 494 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 SUPT20HL2P0C7V6 817 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 TSPY3P0CV98 308 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 199.5 ms