RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 ARNTP27540 789 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 COPB2P35606 906 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 CD96P40200 585 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 OXCT1P55809 520 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 ZNF124Q15973 351 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 LRRFIP1Q32MZ4 808 aaKnown RBP6.7□□□□□ -1.34
PRKDC-209ENST00000540819 ANGEL2Q5VTE6 544 aaKnown RBP6.7□□□□□ -1.34
PRKDC-209ENST00000540819 ANO1Q5XXA6 986 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 RUFY4Q6ZNE9 571 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 SULF2Q8IWU5 870 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 TOP6BLQ8N6T0 577 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 ANKRD42Q8N9B4 389 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 EXOC2Q96KP1 924 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 HERPUD2Q9BSE4 406 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 NGRNQ9NPE2 291 aaKnown RBP6.7□□□□□ -1.34
PRKDC-209ENST00000540819 LUC7LQ9NQ29 371 aaKnown RBP6.7□□□□□ -1.34
PRKDC-209ENST00000540819 PUF60Q9UHX1 559 aaKnown RBP6.7□□□□□ -1.34
PRKDC-209ENST00000540819 TRHDEQ9UKU6 1024 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 PCDHB5Q9Y5E4 795 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 PCDHB14Q9Y5E9 798 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 PCDHGC5Q9Y5F6 944 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 SNX11Q9Y5W9 270 aa6.7□□□□□ -1.34
PRKDC-209ENST00000540819 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.7□□□□□ -1.34
PRKDC-209ENST00000540819 RASSF10A6NK89 507 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 DBX1A6NMT0 343 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 GABRDO14764 452 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 SUSD5O60279 629 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 ITIH2P19823 946 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 SDSP20132 328 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 POU3F2P20265 443 aaPredicted RBP6.69□□□□□ -1.34
PRKDC-209ENST00000540819 L1CAMP32004 1257 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 PPM1FP49593 454 aaPredicted RBP6.69□□□□□ -1.34
PRKDC-209ENST00000540819 KCTD2Q14681 263 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 ZC3H12AQ5D1E8 599 aaKnown RBP6.69□□□□□ -1.34
PRKDC-209ENST00000540819 SYDE2Q5VT97 1194 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 FOXB2Q5VYV0 432 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 MAP1SQ66K74 1059 aaPredicted RBP6.69□□□□□ -1.34
PRKDC-209ENST00000540819 VHLLQ6RSH7 139 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 LHFPL2Q6ZUX7 228 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 TAB3Q8N5C8 712 aaPredicted RBP6.69□□□□□ -1.34
PRKDC-209ENST00000540819 RNF214Q8ND24 703 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 ISL2Q96A47 359 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 ACSBG1Q96GR2 724 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 IPO9Q96P70 1041 aaKnown RBP6.69□□□□□ -1.34
PRKDC-209ENST00000540819 ELAC2Q9BQ52 826 aaKnown RBP6.69□□□□□ -1.34
PRKDC-209ENST00000540819 CBX8Q9HC52 389 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 PICK1Q9NRD5 415 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 LUZP4Q9P127 313 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 GTF2IRD1Q9UHL9 959 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 SAMM50Q9Y512 469 aa6.69□□□□□ -1.34
PRKDC-209ENST00000540819 MEIS3P2A8K0S8 358 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 AGRPO00253 132 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 SLC26A4O43511 780 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 PAGE1O75459 146 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 FBXO21O94952 628 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 ERVK-24P63145 666 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 TCIRG1Q13488 830 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 CNGB1Q14028 1251 aaPredicted RBP6.68□□□□□ -1.34
PRKDC-209ENST00000540819 MYBPC2Q14324 1141 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 MINDY4Q4G0A6 757 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 SLC23A3Q6PIS1 610 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 TOGARAM2Q6ZUX3 1019 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 PDZD3Q86UT5 571 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 LRRN4CLQ8ND94 238 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 C1orf131Q8NDD1 294 aaKnown RBP6.68□□□□□ -1.34
PRKDC-209ENST00000540819 ASB11Q8WXH4 323 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 CDC6Q99741 560 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 TRIM8Q9BZR9 551 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 ADAMTS6Q9UKP5 1117 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 CYP8B1Q9UNU6 501 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 PLAGL2Q9UPG8 496 aa6.68□□□□□ -1.34
PRKDC-209ENST00000540819 KLRG2A4D1S0 409 aaPredicted RBP6.67□□□□□ -1.34
PRKDC-209ENST00000540819 FAM83GA6ND36 823 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 NEFMP07197 916 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 CT47B1P0C2W7 299 aaPredicted RBP6.67□□□□□ -1.34
PRKDC-209ENST00000540819 NME2P22392 152 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 SIM2Q14190 667 aaPredicted RBP6.67□□□□□ -1.34
PRKDC-209ENST00000540819 KRT72Q14CN4 511 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 DRC7Q8IY82 874 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 CNTD1Q8N815 330 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 USP33Q8TEY7 942 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 TIFAQ96CG3 184 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 NEUROD6Q96NK8 337 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 CDC5LQ99459 802 aaKnown RBP6.67□□□□□ -1.34
PRKDC-209ENST00000540819 PHAXQ9H814 394 aaKnown RBP6.67□□□□□ -1.34
PRKDC-209ENST00000540819 TCF7L1Q9HCS4 588 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 PNMA8BQ9ULN7 279 aaPredicted RBP6.67□□□□□ -1.34
PRKDC-209ENST00000540819 TNKSO95271 1327 aa6.67□□□□□ -1.34
PRKDC-209ENST00000540819 TRBV23-1A0A0A0MS06 115 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 PRRT4C9JH25 899 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 HALP42357 657 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 ZNF280AP59817 542 aaPredicted RBP6.66□□□□□ -1.34
PRKDC-209ENST00000540819 GBX1Q14549 363 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 SAFBQ15424 915 aaKnown RBP eCLIP6.66□□□□□ -1.34
PRKDC-209ENST00000540819 FAM209AQ5JX71 171 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 ICE2Q659A1 982 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 PKN3Q6P5Z2 889 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 CDC37L1Q7L3B6 337 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 ZNF354CQ86Y25 554 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 IFNL2Q8IZJ0 200 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms