RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 TRMT13Q9NUP7 481 aaKnown RBP8.68□□□□□ -1.02
YBX3-209ENST00000540747 MTCH2Q9Y6C9 303 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 ZEB2O60315 1214 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 NMT2O60551 498 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 TNKSO95271 1327 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 TSPY3P0CV98 308 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 TSPY8P0CW00 308 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 CYP2C9P11712 490 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 ATP2A2P16615 1042 aaKnown RBP8.67□□□□□ -1.02
YBX3-209ENST00000540747 EDNRBP24530 442 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 SNAP25P60880 206 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 TFF2Q03403 129 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 PDE4BQ07343 736 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 PPP2R2DQ66LE6 453 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 KCTD1Q719H9 257 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 NOL8Q76FK4 1167 aaKnown RBP8.67□□□□□ -1.02
YBX3-209ENST00000540747 RPUSD2Q8IZ73 545 aaKnown RBP8.67□□□□□ -1.02
YBX3-209ENST00000540747 CLEC4DQ8WXI8 215 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 CTAGE1Q96RT6 745 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 SALL3Q9BXA9 1300 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 ANAPC4Q9UJX5 808 aa8.67□□□□□ -1.02
YBX3-209ENST00000540747 TET1Q8NFU7 2136 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 TANC1Q9C0D5 1861 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 TTC41PQ6P2S7 1318 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 A6NJR5 290 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 PITPNM1O00562 1244 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 NFIBO00712 420 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 ORC4O43929 436 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 LPXNO60711 386 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 CA3P07451 260 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 RFC2P35250 354 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 ALDH5A1P51649 535 aaPredicted RBP8.66□□□□□ -1.02
YBX3-209ENST00000540747 KCNQ1P51787 676 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 TAP1Q03518 808 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 BAATQ14032 418 aaPredicted RBP8.66□□□□□ -1.02
YBX3-209ENST00000540747 GPNMBQ14956 572 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 PPP4R3BQ5MIZ7 849 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 EEPD1Q7L9B9 569 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 DCAF4Q8WV16 495 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 NACAP1Q9BZK3 213 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 INCENPQ9NQS7 918 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 POLR3EQ9NVU0 708 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 CCPG1Q9ULG6 757 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 SCN5AQ14524 2016 aa8.66□□□□□ -1.02
YBX3-209ENST00000540747 RFXAPO00287 272 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 TLL1O43897 1013 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 APPP05067 770 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 SUPT20HL2P0C7V6 817 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 HOXD11P31277 338 aaPredicted RBP8.65□□□□□ -1.02
YBX3-209ENST00000540747 PTPN11Q06124 597 aaPredicted RBP8.65□□□□□ -1.02
YBX3-209ENST00000540747 NBPF20Q3BBV1 942 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 TMEM67Q5HYA8 995 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 TTBK2Q6IQ55 1244 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 NFRKBQ6P4R8 1299 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 NSMFQ6X4W1 530 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 SLC30A10Q6XR72 485 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 KIAA1211Q6ZU35 1233 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 SPRED2Q7Z698 418 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 PHOSPHO2Q8TCD6 241 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 OTUD7AQ8TE49 926 aaPredicted RBP8.65□□□□□ -1.02
YBX3-209ENST00000540747 GPATCH3Q96I76 525 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 SLC9A7Q96T83 725 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 MTG1Q9BT17 334 aaPredicted RBP8.65□□□□□ -1.02
YBX3-209ENST00000540747 C1QTNF1Q9BXJ1 281 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 WDR11Q9BZH6 1224 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 NAPBQ9H115 298 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 RCAN3Q9UKA8 241 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 STX8Q9UNK0 236 aa8.65□□□□□ -1.02
YBX3-209ENST00000540747 ARIH1Q9Y4X5 557 aaPredicted RBP8.65□□□□□ -1.02
YBX3-209ENST00000540747 TCF20Q9UGU0 1960 aaKnown RBP8.64□□□□□ -1.03
YBX3-209ENST00000540747 PTPRSQ13332 1948 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 WDR19Q8NEZ3 1342 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 ZBBXA8MT70 800 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 SLC3A2P08195 630 aaKnown RBP8.64□□□□□ -1.03
YBX3-209ENST00000540747 IQCF3P0C7M6 154 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 SNHG28P0DPA3 235 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 CPT1AP50416 773 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 CTDSPL2Q05D32 466 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 RBL2Q08999 1139 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 IKQ13123 557 aaPredicted RBP8.64□□□□□ -1.03
YBX3-209ENST00000540747 ALX1Q15699 326 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 AAK1Q2M2I8 961 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 LRRFIP1Q32MZ4 808 aaKnown RBP8.64□□□□□ -1.03
YBX3-209ENST00000540747 VPS53Q5VIR6 699 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 SYDE2Q5VT97 1194 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 KRT40Q6A162 431 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 DEFB128Q7Z7B8 93 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 HERC6Q8IVU3 1022 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 CHMP4CQ96CF2 233 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 TSPYL2Q9H2G4 693 aaPredicted RBP8.64□□□□□ -1.03
YBX3-209ENST00000540747 C11orf16Q9NQ32 467 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 ADD3Q9UEY8 706 aaKnown RBP8.64□□□□□ -1.03
YBX3-209ENST00000540747 COG5Q9UP83 839 aa8.64□□□□□ -1.03
YBX3-209ENST00000540747 COL4A4P53420 1690 aaPredicted RBP8.63□□□□□ -1.03
YBX3-209ENST00000540747 TSPY2A6NKD2 308 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 NKRFO15226 690 aaKnown RBP eCLIP8.63□□□□□ -1.03
YBX3-209ENST00000540747 KPNA6O60684 536 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 BAIAP3O94812 1187 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 ARIH2O95376 493 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 MYL3P08590 195 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms