RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-238	ENST00000540663	CALM1	P0DP23	149 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	CALM2	P0DP24	149 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	CALM3	P0DP25	149 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	EDNRB	P24530	442 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	GNAQ	P50148	359 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	ATN1	P54259	1190 aa	Predicted RBP	13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	RTP1	P59025	263 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	CHRDL2	Q6WN34	429 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	SLC39A5	Q6ZMH5	540 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	PCSK9	Q8NBP7	692 aa	Known RBP	13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	CTCFL	Q8NI51	663 aa	Predicted RBP	13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	NUP133	Q8WUM0	1156 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	LENG1	Q96BZ8	264 aa	Predicted RBP	13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	LZTS2	Q9BRK4	669 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663	COLQ	Q9Y215	455 aa	Predicted RBP	13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663		Q9Y3F1	56 aa		13.73	□□□□□ -0.21
SYNE1-238	ENST00000540663		A0A1W2PPC1	479 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663		A0A1W2PQ45	241 aa	Predicted RBP	13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663		A0A1W2PQY0	241 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	CCDC69	A6NI79	296 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	ADCY6	O43306	1168 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	REC8	O95072	547 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	HMGB1	P09429	215 aa	Known RBP	13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	C6orf222	P0C671	652 aa	Predicted RBP	13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	SMARCA1	P28370	1054 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	ACLY	P53396	1101 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	GHRHR	Q02643	423 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	PDE4D	Q08499	809 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	TAPT1	Q6NXT6	567 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	NFXL1	Q6ZNB6	911 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	FBXO16	Q8IX29	292 aa	Predicted RBP	13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	SPZ1	Q9BXG8	430 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	AP5M1	Q9H0R1	490 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	PRO3102	Q9H379	93 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	MAP3K20	Q9NYL2	800 aa	Known RBP	13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	MYH6	P13533	1939 aa		13.72	□□□□□ -0.21
SYNE1-238	ENST00000540663	PNMA6F	A0A0J9YX94	578 aa		13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	RBM47	A0AV96	593 aa	Known RBP	13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	BMP8B	P34820	402 aa		13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	KCNA10	Q16322	511 aa		13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	NOL8	Q76FK4	1167 aa	Known RBP	13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	TLK2	Q86UE8	772 aa		13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	SGMS1	Q86VZ5	419 aa		13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	NSUN6	Q8TEA1	469 aa	Known RBP	13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	FERMT2	Q96AC1	680 aa		13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	NEK1	Q96PY6	1258 aa		13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	PURB	Q96QR8	312 aa	Known RBP	13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	IWS1	Q96ST2	819 aa		13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	GNE	Q9Y223	722 aa	Known RBP	13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	ATP11B	Q9Y2G3	1177 aa		13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	PCDHA1	Q9Y5I3	950 aa		13.71	□□□□□ -0.21
SYNE1-238	ENST00000540663	ELP1	O95163	1332 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	TRIOBP	Q9H2D6	2365 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	NKRF	O15226	690 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	EPB41L2	O43491	1005 aa	Known RBP	13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	ZEB2	O60315	1214 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	PPP1R11	O60927	126 aa	Predicted RBP	13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	HSD17B4	P51659	736 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	SLC35G1	Q2M3R5	365 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	DUSP28	Q4G0W2	176 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	GNAS	Q5JWF2	1037 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	SYNE3	Q6ZMZ3	975 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	DHX32	Q7L7V1	743 aa	Known RBP	13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	EEPD1	Q7L9B9	569 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	HOMER1	Q86YM7	354 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	SCFD2	Q8WU76	684 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	KCNB2	Q92953	911 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	GLT1D1	Q96MS3	346 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	PIGS	Q96S52	555 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	GDF15	Q99988	308 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	GPHN	Q9NQX3	736 aa	Predicted RBP	13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	PRKAG2	Q9UGJ0	569 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	SLC12A7	Q9Y666	1083 aa		13.7	□□□□□ -0.22
SYNE1-238	ENST00000540663	MYADML2	A6NDP7	307 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	OPLAH	O14841	1288 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	CYTH3	O43739	400 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	CABYR	O75952	493 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	ASGR1	P07306	291 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	SMPD1	P17405	629 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	SYN1	P17600	705 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	EXOSC10	Q01780	885 aa	Known RBP	13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	FSCN1	Q16658	493 aa	Known RBP	13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	TRIM60	Q495X7	471 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	RASEF	Q8IZ41	740 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	RRP36	Q96EU6	259 aa	Known RBP	13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	RMDN3	Q96TC7	470 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	SEZ6L	Q9BYH1	1024 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	WDR11	Q9BZH6	1224 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	STARD7	Q9NQZ5	370 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	PDGFC	Q9NRA1	345 aa		13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	RBM27	Q9P2N5	1060 aa	Known RBP	13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	DDX49	Q9Y6V7	483 aa	Known RBP	13.69	□□□□□ -0.22
SYNE1-238	ENST00000540663	MROH7	Q68CQ1	1323 aa		13.68	□□□□□ -0.22
SYNE1-238	ENST00000540663	CTAGE5	O15320	804 aa		13.68	□□□□□ -0.22
SYNE1-238	ENST00000540663	DYNC1LI2	O43237	492 aa	Predicted RBP	13.68	□□□□□ -0.22
SYNE1-238	ENST00000540663	CFB	P00751	764 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms