RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CHRNA2Q15822 529 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 LRCH2Q5VUJ6 765 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 MSL1Q68DK7 614 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 DTHD1Q6ZMT9 781 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 SPATA5Q8NB90 893 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 TTLL11Q8NHH1 800 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 CYFIP2Q96F07 1278 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 ABCF2Q9UG63 623 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 MTMR7Q9Y216 660 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 TACC3Q9Y6A5 838 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 PP2D1A8MPX8 630 aa14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 HMGB1P1B2RPK0 211 aaPredicted RBP14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 PREPLQ4J6C6 727 aaPredicted RBP14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 TOM1L2Q6ZVM7 507 aa14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 SDR42E1Q8WUS8 393 aa14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 TBC1D31Q96DN5 1066 aa14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 A1CFQ9NQ94 594 aaKnown RBP14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 SPEF2Q9C093 1822 aa14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 FAM43BQ6ZT52 329 aaPredicted RBP14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 TAF4BQ92750 862 aa14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 ACTR5Q9H9F9 607 aaPredicted RBP14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 BAIAP2L1Q9UHR4 511 aa14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 ATXN2Q99700 1313 aaKnown RBP14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 ARHGAP23Q9P227 1491 aa14.21□□□□□ -0.13
SFSWAP-209ENST00000540469 ZNF263O14978 683 aa14.21□□□□□ -0.14
SFSWAP-209ENST00000540469 FTCDO95954 541 aa14.21□□□□□ -0.14
SFSWAP-209ENST00000540469 CYB5D1Q6P9G0 228 aa14.21□□□□□ -0.14
SFSWAP-209ENST00000540469 CCDC50Q8IVM0 306 aa14.21□□□□□ -0.14
SFSWAP-209ENST00000540469 CACNA2D3Q8IZS8 1091 aa14.21□□□□□ -0.14
SFSWAP-209ENST00000540469 DISC1Q9NRI5 854 aa14.21□□□□□ -0.14
SFSWAP-209ENST00000540469 MCM8Q9UJA3 840 aa14.21□□□□□ -0.14
SFSWAP-209ENST00000540469 IQSEC3Q9UPP2 1182 aaPredicted RBP14.21□□□□□ -0.14
SFSWAP-209ENST00000540469 SNAP23O00161 211 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 PKN1Q16512 942 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 ZNF662Q6ZS27 426 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 KRT28Q7Z3Y7 464 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 YTHDF3Q7Z739 585 aaKnown RBP14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 UBLCP1Q8WVY7 318 aaPredicted RBP14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 SOS2Q07890 1332 aaPredicted RBP14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 PRPF3O43395 683 aaKnown RBP14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 PDE8BO95263 885 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 GNAT2P19087 354 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 TMC4Q7Z404 712 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 P2RX5Q93086 422 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 MIEF2Q96C03 454 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 CCDC194A0A1B0GVG4 234 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 PPP1R12BO60237 982 aaPredicted RBP14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 CTNNA1P35221 906 aaKnown RBP14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 LONP1P36776 959 aaKnown RBP14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 ARID5AQ03989 594 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 ITIH3Q06033 890 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 BIRC2Q13490 618 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 GLE1Q53GS7 698 aaKnown RBP14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 OR2W6PQ8NHA6 318 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 LUC7LQ9NQ29 371 aaKnown RBP14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 RIPOR2Q9Y4F9 1068 aa14.2□□□□□ -0.14
SFSWAP-209ENST00000540469 GMNCA6NCL1 334 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 GFPT1Q06210 699 aaPredicted RBP14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 RASGRP4Q8TDF6 673 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 SHISA4Q96DD7 197 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 ARHGAP20Q9P2F6 1191 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 SKAP2O75563 359 aaPredicted RBP14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 SLC5A1P13866 664 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 GCFC2P16383 781 aaKnown RBP14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 CYP7A1P22680 504 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 PAX7P23759 505 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 CALRP27797 417 aaKnown RBP14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 TMOD1P28289 359 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 TNNC1P63316 161 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 PPP2R5BQ15173 497 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 RNF217Q8TC41 542 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 PURBQ96QR8 312 aaKnown RBP14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 NLRC4Q9NPP4 1024 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 RBM28Q9NW13 759 aaKnown RBP14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 PACSIN2Q9UNF0 486 aaPredicted RBP14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 MARF1Q9Y4F3 1742 aaKnown RBP14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 TCRBV5S4A2TA0A5A2 114 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 PRLRP16471 622 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 SATB1Q01826 763 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 EHHADHQ08426 723 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 PLCB4Q15147 1175 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 PTPROQ16827 1216 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 IQCKQ8N0W5 287 aa14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 ZSCAN10Q96SZ4 725 aaPredicted RBP14.19□□□□□ -0.14
SFSWAP-209ENST00000540469 PCCAP05165 728 aaPredicted RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 IFFO1Q0D2I5 559 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 PPP1R7Q15435 360 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 NAIF1Q69YI7 327 aaPredicted RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 ANKRD40Q6AI12 368 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 TTI2Q6NXR4 508 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 SAMD1Q6SPF0 538 aaPredicted RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 ENAHQ8N8S7 591 aaPredicted RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 WHAMMQ8TF30 809 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 SGSM3Q96HU1 749 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 DHTKD1Q96HY7 919 aaPredicted RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 RSRC1Q96IZ7 334 aaKnown RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 TRMT112Q9UI30 125 aaKnown RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 TSKSQ9UJT2 592 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 ARFGEF2Q9Y6D5 1785 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms