RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ZYXQ15942 572 aaKnown RBP18.95■□□□□ 0.62
USP28-208ENST00000540438 SNX29Q8TEQ0 813 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 DUSP9Q99956 384 aaKnown RBP18.95■□□□□ 0.62
USP28-208ENST00000540438 TUBGCP2Q9BSJ2 902 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 CRACR2AQ9BSW2 395 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 MEIS1O00470 390 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 BBOX1O75936 387 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 ANKRD20A12PQ8NF67 263 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 OGFRQ9NZT2 677 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 PHLPP2Q6ZVD8 1323 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 MACROD2A1Z1Q3 448 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 PSMA7O14818 248 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 EPHB6O15197 1021 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 KIAA0895Q8NCT3 520 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 MAGEC2Q9UBF1 373 aaPredicted RBP18.94■□□□□ 0.62
USP28-208ENST00000540438 KIF5CO60282 957 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 GNA11P29992 359 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 ADCY7P51828 1080 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 UBXN2AP68543 259 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 CCDC84Q86UT8 332 aaPredicted RBP18.94■□□□□ 0.62
USP28-208ENST00000540438 DNAAF5Q86Y56 855 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 ELOA2Q8IYF1 753 aaPredicted RBP18.94■□□□□ 0.62
USP28-208ENST00000540438 RGS22Q8NE09 1264 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 CNOT6LQ96LI5 555 aaKnown RBP18.94■□□□□ 0.62
USP28-208ENST00000540438 CTAGE1Q96RT6 745 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 ZNF287Q9HBT7 754 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 CCDC88AQ3V6T2 1871 aa18.94■□□□□ 0.62
USP28-208ENST00000540438 APBA3O96018 575 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 TANGO6Q9C0B7 1094 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 KBTBD4Q9NVX7 518 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 E9PMD0 336 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 HOXA13P31271 388 aaPredicted RBP18.93■□□□□ 0.62
USP28-208ENST00000540438 SHMT1P34896 483 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 GRB10Q13322 594 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 SEPT2Q15019 361 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 KRT27Q7Z3Y8 459 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 MB21D1Q8N884 522 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 PARD6BQ9BYG5 372 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 LIMA1Q9UHB6 759 aaKnown RBP18.93■□□□□ 0.62
USP28-208ENST00000540438 MRFAP1Q9Y605 127 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 KIAA1551Q9HCM1 1747 aa18.93■□□□□ 0.62
USP28-208ENST00000540438 PDS5AQ29RF7 1337 aaKnown RBP18.93■□□□□ 0.62
USP28-208ENST00000540438 RCCD1A6NED2 376 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 MAP3K9P80192 1104 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 ARID5AQ03989 594 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 PTPROQ16827 1216 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 PANX2Q96RD6 677 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 NOC4LQ9BVI4 516 aaKnown RBP18.92■□□□□ 0.62
USP28-208ENST00000540438 SEMA6BQ9H3T3 888 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 REXO2Q9Y3B8 237 aaKnown RBP18.92■□□□□ 0.62
USP28-208ENST00000540438 RREB1Q92766 1687 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 CCP110O43303 1012 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 SASH3O75995 380 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 KRT25Q7Z3Z0 450 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 PNMA5Q96PV4 448 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 SPZ1Q9BXG8 430 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 PDGFDQ9GZP0 370 aaPredicted RBP18.92■□□□□ 0.62
USP28-208ENST00000540438 TDRD3Q9H7E2 651 aaKnown RBP18.92■□□□□ 0.62
USP28-208ENST00000540438 DNAJC18Q9H819 358 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 MMRN2Q9H8L6 949 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 SH3GLB2Q9NR46 395 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 KCND1Q9NSA2 647 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 RMND1Q9NWS8 449 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 LUC7L2Q9Y383 392 aaKnown RBP18.92■□□□□ 0.62
USP28-208ENST00000540438 TTI2Q6NXR4 508 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 TMED8Q6PL24 325 aaPredicted RBP18.92■□□□□ 0.62
USP28-208ENST00000540438 CNGA4Q8IV77 575 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 ANKS1AQ92625 1134 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 BLOC1S4Q9NUP1 217 aa18.92■□□□□ 0.62
USP28-208ENST00000540438 JAG1P78504 1218 aa18.91■□□□□ 0.62
USP28-208ENST00000540438 APOBEC3HQ6NTF7 200 aaKnown RBP18.91■□□□□ 0.62
USP28-208ENST00000540438 CALML4Q96GE6 196 aa18.91■□□□□ 0.62
USP28-208ENST00000540438 LACRTQ9GZZ8 138 aa18.91■□□□□ 0.62
USP28-208ENST00000540438 TRPC5Q9UL62 973 aaPredicted RBP18.91■□□□□ 0.62
USP28-208ENST00000540438 SRGNP10124 158 aa18.91■□□□□ 0.62
USP28-208ENST00000540438 EEF2P13639 858 aaKnown RBP18.91■□□□□ 0.62
USP28-208ENST00000540438 TMCO3Q6UWJ1 677 aa18.91■□□□□ 0.62
USP28-208ENST00000540438 GIMAP8Q8ND71 665 aaPredicted RBP18.91■□□□□ 0.62
USP28-208ENST00000540438 IKZF4Q9H2S9 585 aa18.91■□□□□ 0.62
USP28-208ENST00000540438 FHOD1Q9Y613 1164 aa18.91■□□□□ 0.62
USP28-208ENST00000540438 CLRN2A0PK11 232 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 PNMA6AP0CW24 399 aaPredicted RBP18.9■□□□□ 0.62
USP28-208ENST00000540438 CYP4A11Q02928 519 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 STIM1Q13586 685 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 CYP2W1Q8TAV3 490 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 NLRC4Q9NPP4 1024 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 RASSF10A6NK89 507 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 ZNF185O15231 689 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 H2AFXP16104 143 aaPredicted RBP18.9■□□□□ 0.62
USP28-208ENST00000540438 WDR59Q6PJI9 974 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 DDX12PQ92771 950 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 P2RX5Q93086 422 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 SMARCAL1Q9NZC9 954 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 EPN1Q9Y6I3 576 aaPredicted RBP18.9■□□□□ 0.62
USP28-208ENST00000540438 TTLL1O95922 423 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 PLCG2P16885 1265 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 SLC1A4P43007 532 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 AOC3Q16853 763 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 FCHSD1Q86WN1 690 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 KRT222Q8N1A0 295 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms