RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 PIBF1Q8WXW3 757 aa17.52■□□□□ 0.39
UBE3B-212ENST00000540230 PDGFCQ9NRA1 345 aa17.52■□□□□ 0.39
UBE3B-212ENST00000540230 SYNRGQ9UMZ2 1314 aa17.51■□□□□ 0.39
UBE3B-212ENST00000540230 EVI5O60447 810 aa17.51■□□□□ 0.39
UBE3B-212ENST00000540230 ADCYAP1R1P41586 468 aa17.51■□□□□ 0.39
UBE3B-212ENST00000540230 TAPT1Q6NXT6 567 aa17.51■□□□□ 0.39
UBE3B-212ENST00000540230 DHX32Q7L7V1 743 aaKnown RBP17.51■□□□□ 0.39
UBE3B-212ENST00000540230 C7orf61Q8IZ16 206 aa17.51■□□□□ 0.39
UBE3B-212ENST00000540230 CMTR1Q8N1G2 835 aaKnown RBP17.51■□□□□ 0.39
UBE3B-212ENST00000540230 MAP3K14Q99558 947 aa17.51■□□□□ 0.39
UBE3B-212ENST00000540230 AMNQ9BXJ7 453 aa17.51■□□□□ 0.39
UBE3B-212ENST00000540230 KBTBD13C9JR72 458 aa17.5■□□□□ 0.39
UBE3B-212ENST00000540230 REC8O95072 547 aa17.5■□□□□ 0.39
UBE3B-212ENST00000540230 ATN1P54259 1190 aaPredicted RBP17.5■□□□□ 0.39
UBE3B-212ENST00000540230 SGMS1Q86VZ5 419 aa17.5■□□□□ 0.39
UBE3B-212ENST00000540230 TMTC2Q8N394 836 aa17.5■□□□□ 0.39
UBE3B-212ENST00000540230 SRBD1Q8N5C6 995 aaKnown RBP17.5■□□□□ 0.39
UBE3B-212ENST00000540230 RGS22Q8NE09 1264 aa17.5■□□□□ 0.39
UBE3B-212ENST00000540230 CTCFLQ8NI51 663 aaPredicted RBP17.5■□□□□ 0.39
UBE3B-212ENST00000540230 SYTL5Q8TDW5 730 aaPredicted RBP17.5■□□□□ 0.39
UBE3B-212ENST00000540230 ADD3Q9UEY8 706 aaKnown RBP17.5■□□□□ 0.39
UBE3B-212ENST00000540230 BRPF3Q9ULD4 1205 aa17.5■□□□□ 0.39
UBE3B-212ENST00000540230 MRPL11Q9Y3B7 192 aaKnown RBP17.5■□□□□ 0.39
UBE3B-212ENST00000540230 DUSP11O75319 330 aaKnown RBP17.49■□□□□ 0.39
UBE3B-212ENST00000540230 KRT32Q14532 448 aa17.49■□□□□ 0.39
UBE3B-212ENST00000540230 MICU3Q86XE3 530 aa17.49■□□□□ 0.39
UBE3B-212ENST00000540230 FERMT2Q96AC1 680 aa17.49■□□□□ 0.39
UBE3B-212ENST00000540230 JAKMIP1Q96N16 626 aaKnown RBP17.49■□□□□ 0.39
UBE3B-212ENST00000540230 TAAR1Q96RJ0 339 aa17.49■□□□□ 0.39
UBE3B-212ENST00000540230 PCDHA1Q9Y5I3 950 aa17.49■□□□□ 0.39
UBE3B-212ENST00000540230 SLC12A7Q9Y666 1083 aa17.49■□□□□ 0.39
UBE3B-212ENST00000540230 CFBP00751 764 aa17.48■□□□□ 0.39
UBE3B-212ENST00000540230 EDNRBP24530 442 aa17.48■□□□□ 0.39
UBE3B-212ENST00000540230 APOA5Q6Q788 366 aa17.48■□□□□ 0.39
UBE3B-212ENST00000540230 KLHDC9Q8NEP7 349 aa17.48■□□□□ 0.39
UBE3B-212ENST00000540230 SPZ1Q9BXG8 430 aa17.48■□□□□ 0.39
UBE3B-212ENST00000540230 PNMA6FA0A0J9YX94 578 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 CTAGE5O15320 804 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 SMPD1P17405 629 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 KIF5BP33176 963 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 TNFAIP2Q03169 654 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 CCSAPQ6IQ19 270 aaPredicted RBP17.47■□□□□ 0.39
UBE3B-212ENST00000540230 RNF180Q86T96 592 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 DNERQ8NFT8 737 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 USP26Q9BXU7 913 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 VTA1Q9NP79 307 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 ZMYND8Q9ULU4 1186 aaPredicted RBP17.47■□□□□ 0.39
UBE3B-212ENST00000540230 PHF24Q9UPV7 400 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 GNEQ9Y223 722 aaKnown RBP17.47■□□□□ 0.39
UBE3B-212ENST00000540230 NR2E3Q9Y5X4 410 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 hCG_1642624A0A1W2PR95 340 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 SYN1P17600 705 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 HSD17B4P51659 736 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 GHRHRQ02643 423 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 MCF2L2Q86YR7 1114 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 CCDC82Q8N4S0 544 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 FANCBQ8NB91 859 aa17.47■□□□□ 0.39
UBE3B-212ENST00000540230 UPF3AQ9H1J1 476 aaKnown RBP17.47■□□□□ 0.39
UBE3B-212ENST00000540230 LOC102724159A0A0B4J2E5 919 aa17.46■□□□□ 0.39
UBE3B-212ENST00000540230 C6orf222P0C671 652 aaPredicted RBP17.46■□□□□ 0.39
UBE3B-212ENST00000540230 CALM1P0DP23 149 aa17.46■□□□□ 0.39
UBE3B-212ENST00000540230 CALM2P0DP24 149 aa17.46■□□□□ 0.39
UBE3B-212ENST00000540230 CALM3P0DP25 149 aa17.46■□□□□ 0.39
UBE3B-212ENST00000540230 HOXA13P31271 388 aaPredicted RBP17.46■□□□□ 0.39
UBE3B-212ENST00000540230 GJA9P57773 515 aa17.46■□□□□ 0.39
UBE3B-212ENST00000540230 PWP2Q15269 919 aaKnown RBP17.46■□□□□ 0.39
UBE3B-212ENST00000540230 SLC39A5Q6ZMH5 540 aa17.46■□□□□ 0.39
UBE3B-212ENST00000540230 TMTC3Q6ZXV5 915 aa17.46■□□□□ 0.39
UBE3B-212ENST00000540230 KLF18A0A0U1RQI7 1052 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 A0A1W2PQ45 241 aaPredicted RBP17.45■□□□□ 0.38
UBE3B-212ENST00000540230 A0A1W2PQY0 241 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 HMGB1P09429 215 aaKnown RBP17.45■□□□□ 0.38
UBE3B-212ENST00000540230 CST5P28325 142 aaPredicted RBP17.45■□□□□ 0.38
UBE3B-212ENST00000540230 SMARCA1P28370 1054 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 RTP1P59025 263 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 BEX3Q00994 111 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 PDE4DQ08499 809 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 KCNA10Q16322 511 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 BLOC1S2Q6QNY1 142 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 Q6ZUG5 572 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 NOL8Q76FK4 1167 aaKnown RBP17.45■□□□□ 0.38
UBE3B-212ENST00000540230 TLK2Q86UE8 772 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 RRP36Q96EU6 259 aaKnown RBP17.45■□□□□ 0.38
UBE3B-212ENST00000540230 MAF1Q9H063 256 aa17.45■□□□□ 0.38
UBE3B-212ENST00000540230 LAMA3Q16787 3333 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 CNTNAP5Q8WYK1 1306 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 RBM47A0AV96 593 aaKnown RBP17.44■□□□□ 0.38
UBE3B-212ENST00000540230 EIF2AK2P19525 551 aaKnown RBP17.44■□□□□ 0.38
UBE3B-212ENST00000540230 CASTP20810 708 aaKnown RBP17.44■□□□□ 0.38
UBE3B-212ENST00000540230 RPS6KB1P23443 525 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 GNAQP50148 359 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 ACLYP53396 1101 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 APOBRQ0VD83 1088 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 SNX17Q15036 470 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 IQSEC1Q6DN90 963 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 CHRDL2Q6WN34 429 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 RMDN3Q96TC7 470 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 LZTS2Q9BRK4 669 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 PXMP2Q9NR77 195 aa17.44■□□□□ 0.38
UBE3B-212ENST00000540230 FAM217BQ9NTX9 383 aaPredicted RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms