RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TOP1P11387 765 aaKnown RBP16.02■□□□□ 0.16
SS18-204ENST00000539244 BAATQ14032 418 aaPredicted RBP16.02■□□□□ 0.16
SS18-204ENST00000539244 CCDC96Q2M329 555 aa16.02■□□□□ 0.16
SS18-204ENST00000539244 SYDE2Q5VT97 1194 aa16.02■□□□□ 0.16
SS18-204ENST00000539244 TTBK2Q6IQ55 1244 aa16.02■□□□□ 0.16
SS18-204ENST00000539244 ATXN2LQ8WWM7 1075 aaKnown RBP16.02■□□□□ 0.16
SS18-204ENST00000539244 ALDH8A1Q9H2A2 487 aaPredicted RBP16.02■□□□□ 0.16
SS18-204ENST00000539244 PNMA2Q9UL42 364 aa16.02■□□□□ 0.16
SS18-204ENST00000539244 NFIBO00712 420 aa16.01■□□□□ 0.15
SS18-204ENST00000539244 FGAP02671 866 aa16.01■□□□□ 0.15
SS18-204ENST00000539244 CCL23P55773 120 aa16.01■□□□□ 0.15
SS18-204ENST00000539244 PSMC6P62333 389 aa16.01■□□□□ 0.15
SS18-204ENST00000539244 ADGRE1Q14246 886 aa16.01■□□□□ 0.15
SS18-204ENST00000539244 OTOP2Q7RTS6 562 aa16.01■□□□□ 0.15
SS18-204ENST00000539244 RPUSD2Q8IZ73 545 aaKnown RBP16.01■□□□□ 0.15
SS18-204ENST00000539244 TMEM47Q9BQJ4 181 aa16.01■□□□□ 0.15
SS18-204ENST00000539244 POLR3EQ9NVU0 708 aa16.01■□□□□ 0.15
SS18-204ENST00000539244 YBX2Q9Y2T7 364 aaKnown RBP16.01■□□□□ 0.15
SS18-204ENST00000539244 PFKMP08237 780 aa16■□□□□ 0.15
SS18-204ENST00000539244 SUPT20HL2P0C7V6 817 aa16■□□□□ 0.15
SS18-204ENST00000539244 SLC16A2P36021 539 aa16■□□□□ 0.15
SS18-204ENST00000539244 CPT1AP50416 773 aa16■□□□□ 0.15
SS18-204ENST00000539244 PURAQ00577 322 aaKnown RBP16■□□□□ 0.15
SS18-204ENST00000539244 CLEC4DQ8WXI8 215 aa16■□□□□ 0.15
SS18-204ENST00000539244 WDR11Q9BZH6 1224 aa16■□□□□ 0.15
SS18-204ENST00000539244 NKX2-4Q9H2Z4 354 aa16■□□□□ 0.15
SS18-204ENST00000539244 SLC28A3Q9HAS3 691 aa16■□□□□ 0.15
SS18-204ENST00000539244 MTMR7Q9Y216 660 aa16■□□□□ 0.15
SS18-204ENST00000539244 WDR19Q8NEZ3 1342 aa15.99■□□□□ 0.15
SS18-204ENST00000539244 NKRFO15226 690 aaKnown RBP eCLIP15.99■□□□□ 0.15
SS18-204ENST00000539244 SNHG28P0DPA3 235 aa15.99■□□□□ 0.15
SS18-204ENST00000539244 PDHBP11177 359 aa15.99■□□□□ 0.15
SS18-204ENST00000539244 PCP11498 1178 aaKnown RBP15.99■□□□□ 0.15
SS18-204ENST00000539244 EDNRBP24530 442 aa15.99■□□□□ 0.15
SS18-204ENST00000539244 PDE1AP54750 535 aa15.99■□□□□ 0.15
SS18-204ENST00000539244 MCMDC2Q4G0Z9 681 aa15.99■□□□□ 0.15
SS18-204ENST00000539244 TTC14Q96N46 770 aa15.99■□□□□ 0.15
SS18-204ENST00000539244 THEGQ9P2T0 379 aa15.99■□□□□ 0.15
SS18-204ENST00000539244 PCDHA11Q9Y5I1 949 aa15.99■□□□□ 0.15
SS18-204ENST00000539244 SLC4A7Q9Y6M7 1214 aa15.99■□□□□ 0.15
SS18-204ENST00000539244 TNKSO95271 1327 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 FRMPD2Q68DX3 1309 aaPredicted RBP15.98■□□□□ 0.15
SS18-204ENST00000539244 A0A0D9SFI3 127 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 PTPDC1A2A3K4 754 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 TNFRSF10AO00220 468 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 HSPD1P10809 573 aaKnown RBP15.98■□□□□ 0.15
SS18-204ENST00000539244 ZNF543Q08ER8 600 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 ANKRD45Q5TZF3 282 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 SLC30A10Q6XR72 485 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 RNF207Q6ZRF8 634 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 DNERQ8NFT8 737 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 SCLYQ96I15 445 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 FAM227BQ96M60 508 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 ASB2Q96Q27 587 aa15.98■□□□□ 0.15
SS18-204ENST00000539244 MTG1Q9BT17 334 aaPredicted RBP15.98■□□□□ 0.15
SS18-204ENST00000539244 TRMT13Q9NUP7 481 aaKnown RBP15.98■□□□□ 0.15
SS18-204ENST00000539244 ZBTB47Q9UFB7 747 aaPredicted RBP15.98■□□□□ 0.15
SS18-204ENST00000539244 RRP12Q5JTH9 1297 aaKnown RBP15.97■□□□□ 0.15
SS18-204ENST00000539244 NFRKBQ6P4R8 1299 aa15.97■□□□□ 0.15
SS18-204ENST00000539244 OR6J1Q8NGC5 347 aa15.97■□□□□ 0.15
SS18-204ENST00000539244 PPM1EQ8WY54 764 aa15.97■□□□□ 0.15
SS18-204ENST00000539244 MPHOSPH6Q99547 160 aaKnown RBP15.97■□□□□ 0.15
SS18-204ENST00000539244 MAF1Q9H063 256 aa15.97■□□□□ 0.15
SS18-204ENST00000539244 GPCPD1Q9NPB8 672 aa15.97■□□□□ 0.15
SS18-204ENST00000539244 TOMM22Q9NS69 142 aa15.97■□□□□ 0.15
SS18-204ENST00000539244 NCOR1O75376 2440 aa15.97■□□□□ 0.15
SS18-204ENST00000539244 SCN5AQ14524 2016 aa15.97■□□□□ 0.15
SS18-204ENST00000539244 RAD50Q92878 1312 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 A6NJR5 290 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 PITPNM1O00562 1244 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 KPNA6O60684 536 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 CYP2C9P11712 490 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 ATP2A2P16615 1042 aaKnown RBP15.96■□□□□ 0.15
SS18-204ENST00000539244 CALML3P27482 149 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 RABGGTBP53611 331 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 RPS6P62753 249 aaKnown RBP15.96■□□□□ 0.15
SS18-204ENST00000539244 MRPS5P82675 430 aaKnown RBP15.96■□□□□ 0.15
SS18-204ENST00000539244 PTPN11Q06124 597 aaPredicted RBP15.96■□□□□ 0.15
SS18-204ENST00000539244 HDAC1Q13547 482 aaPredicted RBP15.96■□□□□ 0.15
SS18-204ENST00000539244 PPP2R5BQ15173 497 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 BRDTQ58F21 947 aaPredicted RBP15.96■□□□□ 0.15
SS18-204ENST00000539244 PPP2R2DQ66LE6 453 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 ZNF589Q86UQ0 364 aaPredicted RBP15.96■□□□□ 0.15
SS18-204ENST00000539244 RGS22Q8NE09 1264 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 SCFD2Q8WU76 684 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 TANC1Q9C0D5 1861 aa15.96■□□□□ 0.15
SS18-204ENST00000539244 MYL3P08590 195 aa15.95■□□□□ 0.14
SS18-204ENST00000539244 IGFBP4P22692 258 aa15.95■□□□□ 0.14
SS18-204ENST00000539244 RFC2P35250 354 aa15.95■□□□□ 0.14
SS18-204ENST00000539244 NT5C2P49902 561 aa15.95■□□□□ 0.14
SS18-204ENST00000539244 RRP1P56182 461 aaKnown RBP15.95■□□□□ 0.14
SS18-204ENST00000539244 PDE4DQ08499 809 aa15.95■□□□□ 0.14
SS18-204ENST00000539244 TTLL4Q14679 1199 aa15.95■□□□□ 0.14
SS18-204ENST00000539244 NBPF20Q3BBV1 942 aa15.95■□□□□ 0.14
SS18-204ENST00000539244 GPATCH4Q5T3I0 446 aaKnown RBP15.95■□□□□ 0.14
SS18-204ENST00000539244 GPHNQ9NQX3 736 aaPredicted RBP15.95■□□□□ 0.14
SS18-204ENST00000539244 CCDC171Q6TFL3 1326 aa15.94■□□□□ 0.14
SS18-204ENST00000539244 REV3LO60673 3130 aa15.94■□□□□ 0.14
SS18-204ENST00000539244 ZBBXA8MT70 800 aa15.94■□□□□ 0.14
SS18-204ENST00000539244 B4DLN1 442 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms