RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 LAMA3Q16787 3333 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 ELP1O95163 1332 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 ANTXR2P58335 489 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 TROAPQ12815 778 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 KCNA10Q16322 511 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 TMEM67Q5HYA8 995 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 TAPT1Q6NXT6 567 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 CATIPQ7Z7H3 387 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 TLK2Q86UE8 772 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 FBXO16Q8IX29 292 aaPredicted RBP13.46□□□□□ -0.25
RTN3-209ENST00000538995 STAG2Q8N3U4 1231 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 IGDCC4Q8TDY8 1250 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 GLT1D1Q96MS3 346 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 PURBQ96QR8 312 aaKnown RBP13.46□□□□□ -0.25
RTN3-209ENST00000538995 MAP3K14Q99558 947 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 ANO2Q9NQ90 1003 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 STARD7Q9NQZ5 370 aa13.46□□□□□ -0.25
RTN3-209ENST00000538995 SMCHD1A6NHR9 2005 aa13.46□□□□□ -0.26
RTN3-209ENST00000538995 LCTP09848 1927 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.45□□□□□ -0.26
RTN3-209ENST00000538995 RBM47A0AV96 593 aaKnown RBP13.45□□□□□ -0.26
RTN3-209ENST00000538995 MYADML2A6NDP7 307 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 SLC27A2O14975 620 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 ZBTB5O15062 677 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 CDC45O75419 566 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 DDAH1O94760 285 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 SMPD1P17405 629 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 MCM5P33992 734 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 GHRHRQ02643 423 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 NECTIN1Q15223 517 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 GNASQ5JWF2 1037 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 RNF20Q5VTR2 975 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 CREB3L3Q68CJ9 461 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 NOL8Q76FK4 1167 aaKnown RBP13.45□□□□□ -0.26
RTN3-209ENST00000538995 ANKRD33Q7Z3H0 272 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 SAMD3Q8N6K7 520 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 TMEM87BQ96K49 555 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 TOX2Q96NM4 488 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 LBHD1Q9BQE6 289 aaPredicted RBP13.45□□□□□ -0.26
RTN3-209ENST00000538995 AMNQ9BXJ7 453 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 PDLIM7Q9NR12 457 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 MCM3APO60318 1980 aa13.45□□□□□ -0.26
RTN3-209ENST00000538995 MROH7Q68CQ1 1323 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 CTAGE5O15320 804 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 ZEB2O60315 1214 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 CABYRO75952 493 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 NEFLP07196 543 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 ASGR1P07306 291 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 TLE2Q04725 743 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 PDE4DQ08499 809 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 FSCN1Q16658 493 aaKnown RBP13.44□□□□□ -0.26
RTN3-209ENST00000538995 DUSP28Q4G0W2 176 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 EEPD1Q7L9B9 569 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 SKAP1Q86WV1 359 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 TDHQ8IZJ6 230 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 TMTC2Q8N394 836 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 SYTL5Q8TDW5 730 aaPredicted RBP13.44□□□□□ -0.26
RTN3-209ENST00000538995 UBE2OQ9C0C9 1292 aaKnown RBP13.44□□□□□ -0.26
RTN3-209ENST00000538995 AP5M1Q9H0R1 490 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 RIOX1Q9H6W3 641 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 LY9Q9HBG7 655 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 SENP2Q9HC62 589 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 VAT1LQ9HCJ6 419 aa13.44□□□□□ -0.26
RTN3-209ENST00000538995 MAP3K20Q9NYL2 800 aaKnown RBP13.44□□□□□ -0.26
RTN3-209ENST00000538995 A0A0U1RQG5 324 aaPredicted RBP13.43□□□□□ -0.26
RTN3-209ENST00000538995 SH2B2O14492 632 aaPredicted RBP13.43□□□□□ -0.26
RTN3-209ENST00000538995 NKRFO15226 690 aaKnown RBP eCLIP13.43□□□□□ -0.26
RTN3-209ENST00000538995 PRC1O43663 620 aa13.43□□□□□ -0.26
RTN3-209ENST00000538995 CLTBP09497 229 aa13.43□□□□□ -0.26
RTN3-209ENST00000538995 KIF5BP33176 963 aa13.43□□□□□ -0.26
RTN3-209ENST00000538995 LRIT3Q3SXY7 679 aa13.43□□□□□ -0.26
RTN3-209ENST00000538995 CHST3Q7LGC8 479 aa13.43□□□□□ -0.26
RTN3-209ENST00000538995 NSUN6Q8TEA1 469 aaKnown RBP13.43□□□□□ -0.26
RTN3-209ENST00000538995 SCFD2Q8WU76 684 aa13.43□□□□□ -0.26
RTN3-209ENST00000538995 IWS1Q96ST2 819 aa13.43□□□□□ -0.26
RTN3-209ENST00000538995 SEZ6LQ9BYH1 1024 aa13.43□□□□□ -0.26
RTN3-209ENST00000538995 PRDM5Q9NQX1 630 aaPredicted RBP13.43□□□□□ -0.26
RTN3-209ENST00000538995 PDGFCQ9NRA1 345 aa13.43□□□□□ -0.26
RTN3-209ENST00000538995 DDX49Q9Y6V7 483 aaKnown RBP13.43□□□□□ -0.26
RTN3-209ENST00000538995 DCDC2CA8MYV0 355 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 KIAA0355O15063 1070 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 PQBP1O60828 265 aaKnown RBP13.42□□□□□ -0.26
RTN3-209ENST00000538995 PPP1R11O60927 126 aaPredicted RBP13.42□□□□□ -0.26
RTN3-209ENST00000538995 SMARCA1P28370 1054 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 LIFRP42702 1097 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 HSD17B4P51659 736 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 MDM2Q00987 491 aaPredicted RBP13.42□□□□□ -0.26
RTN3-209ENST00000538995 PPP2R5BQ15173 497 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 SLC35G1Q2M3R5 365 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 ZNF654Q8IZM8 581 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 CTCFLQ8NI51 663 aaPredicted RBP13.42□□□□□ -0.26
RTN3-209ENST00000538995 LZTS2Q9BRK4 669 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 SPZ1Q9BXG8 430 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 WDR11Q9BZH6 1224 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 RNF216Q9NWF9 866 aaPredicted RBP13.42□□□□□ -0.26
RTN3-209ENST00000538995 PCDH10Q9P2E7 1040 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 PCDHA1Q9Y5I3 950 aa13.42□□□□□ -0.26
RTN3-209ENST00000538995 PNMA6FA0A0J9YX94 578 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 TRIM43BA6NCK2 446 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 CCDC69A6NI79 296 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms