RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 MEA1Q16626 185 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 CFAP221Q4G0U5 840 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 SFMBT2Q5VUG0 894 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 DDX46Q7L014 1031 aaKnown RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 KLHL29Q96CT2 875 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 PHACTR1Q9C0D0 580 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 ARHGEF3Q9NR81 526 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 KIF28PB7ZC32 967 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 TPD52L2O43399 206 aaKnown RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 HEXIM1O94992 359 aaKnown RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 ZFXP17010 805 aaPredicted RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 EIF4BP23588 611 aaKnown RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 SKIV2L2P42285 1042 aaKnown RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 MAGEA10P43363 369 aaPredicted RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 CARSP49589 748 aaKnown RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 CCDC92Q53HC0 331 aaPredicted RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 OR52E8Q6IFG1 317 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 SPICE1Q8N0Z3 855 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 MAP3K14Q99558 947 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 UNC45AQ9H3U1 944 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 EPB41L5Q9HCM4 733 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 PAIP2BQ9ULR5 123 aaKnown RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 PTPRMP28827 1452 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 A0A1W2PQC6 194 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 PALM3A6NDB9 673 aaPredicted RBP13.66□□□□□ -0.22
USP3-203ENST00000538686 TMEM221A6NGB7 291 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 IGF2BP3O00425 579 aaKnown RBP eCLIP13.66□□□□□ -0.22
USP3-203ENST00000538686 TMOD1P28289 359 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 PSMD7P51665 324 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 COPB1P53618 953 aaKnown RBP13.66□□□□□ -0.22
USP3-203ENST00000538686 INHBCP55103 352 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 CUL1Q13616 776 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 TTF1Q15361 905 aaPredicted RBP13.66□□□□□ -0.22
USP3-203ENST00000538686 MCMDC2Q4G0Z9 681 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 TMTC2Q8N394 836 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 RNF10Q8N5U6 811 aaKnown RBP13.66□□□□□ -0.22
USP3-203ENST00000538686 ZNF579Q8NAF0 562 aaKnown RBP13.66□□□□□ -0.22
USP3-203ENST00000538686 SMC1BQ8NDV3 1235 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 NCSTNQ92542 709 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 ZNF317Q96PQ6 595 aaPredicted RBP13.66□□□□□ -0.22
USP3-203ENST00000538686 RPS6KC1Q96S38 1066 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 TIPINQ9BVW5 301 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 ZCWPW1Q9H0M4 648 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 ECT2Q9H8V3 914 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 PDP2Q9P2J9 529 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 EID1Q9Y6B2 187 aa13.66□□□□□ -0.22
USP3-203ENST00000538686 TSPOAP1O95153 1857 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 GRID2IPA4D2P6 1211 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 FAM153BP0C7A2 387 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 FAM200BP0CF97 657 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 RARAP10276 462 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 CALB2P22676 271 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 COPS2P61201 443 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 KCNJ2P63252 427 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 KRT31Q15323 416 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 KBTBD12Q3ZCT8 623 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 FAM153CQ494X1 144 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 WAPLQ7Z5K2 1190 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 SH3TC2Q8TF17 1288 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 IFT81Q8WYA0 676 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 PTPRN2Q92932 1015 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 MPHOSPH6Q99547 160 aaKnown RBP13.65□□□□□ -0.22
USP3-203ENST00000538686 MIS12Q9H081 205 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 RNPEPL1Q9HAU8 725 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 PREBQ9HCU5 417 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 DLGAP2Q9P1A6 1054 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 FAM153AQ9UHL3 310 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 CAPN11Q9UMQ6 739 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 BCL9O00512 1426 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 NEO1Q92859 1461 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 H0YGN5 161 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 SH2B2O14492 632 aaPredicted RBP13.65□□□□□ -0.22
USP3-203ENST00000538686 PRPF3O43395 683 aaKnown RBP13.65□□□□□ -0.22
USP3-203ENST00000538686 ZNF189O75820 626 aaPredicted RBP13.65□□□□□ -0.22
USP3-203ENST00000538686 IDO1P14902 403 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 POLD1P28340 1107 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 MATR3P43243 847 aaKnown RBP eCLIP13.65□□□□□ -0.22
USP3-203ENST00000538686 CDK17Q00537 523 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 GUCY2DQ02846 1103 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 ZNF844Q08AG5 666 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 ZNF827Q17R98 1081 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 GALNTL6Q49A17 601 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 FAM133BQ5BKY9 247 aaKnown RBP13.65□□□□□ -0.22
USP3-203ENST00000538686 OTUD7BQ6GQQ9 843 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 SULT6B1Q6IMI4 303 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 CEP128Q6ZU80 1094 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 STOX1Q6ZVD7 989 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.65□□□□□ -0.22
USP3-203ENST00000538686 CCDC134Q9H6E4 229 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 BABAM1Q9NWV8 329 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 SPATA7Q9P0W8 599 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 NFS1Q9Y697 457 aa13.65□□□□□ -0.22
USP3-203ENST00000538686 BZW2Q9Y6E2 419 aaKnown RBP13.65□□□□□ -0.22
USP3-203ENST00000538686 POGZQ7Z3K3 1410 aa13.65□□□□□ -0.23
USP3-203ENST00000538686 CPLX1O14810 134 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 FOXN1O15353 648 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 CTNND1O60716 968 aaKnown RBP13.64□□□□□ -0.23
USP3-203ENST00000538686 CTNNA1P35221 906 aaKnown RBP13.64□□□□□ -0.23
USP3-203ENST00000538686 PEX5P50542 639 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 TUBP50607 506 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms