RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 VPS54Q9P1Q0 977 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 RGPD1P0DJD0 1748 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 PPP1R3GB7ZBB8 358 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 TRIM37O94972 964 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 MOCS3O95396 460 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 MYL1P05976 194 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 DRD4P21917 467 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 TOB1P50616 345 aaPredicted RBP11.81□□□□□ -0.52
RTN3-208ENST00000537981 G3BP1Q13283 466 aaKnown RBP eCLIP11.81□□□□□ -0.52
RTN3-208ENST00000537981 ADAM9Q13443 819 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 MYBPC2Q14324 1141 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 PROSER3Q2NL68 480 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 NAALADL2Q58DX5 795 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 MTHFD1LQ6UB35 978 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 SLC17A8Q8NDX2 589 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 FAM81AQ8TBF8 368 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 TEKT4Q8WW24 435 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 CASKIN2Q8WXE0 1202 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 ABCF3Q9NUQ8 709 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 EDC4Q6P2E9 1401 aaKnown RBP11.81□□□□□ -0.52
RTN3-208ENST00000537981 GCLCP48506 637 aaPredicted RBP11.81□□□□□ -0.52
RTN3-208ENST00000537981 PDIA5Q14554 519 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 C8orf74Q6P047 294 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 ANKRD23Q86SG2 305 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 SYCP3Q8IZU3 236 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 ANKRD13CQ8N6S4 541 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 ATL2Q8NHH9 583 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 CNKSR1Q969H4 720 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 CCDC51Q96ER9 411 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 ALG1Q9BT22 464 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 TMBIM4Q9HC24 238 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 LRWD1Q9UFC0 647 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 LNPEPQ9UIQ6 1025 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 SLC12A4Q9UP95 1085 aa11.81□□□□□ -0.52
RTN3-208ENST00000537981 NWD2Q9ULI1 1742 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 C5orf60A6NFR6 353 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 CCT8L1PA6NM43 557 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 A6NNZ2 444 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 CPLX1O14810 134 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 NKRFO15226 690 aaKnown RBP eCLIP11.8□□□□□ -0.52
RTN3-208ENST00000537981 HEXIM1O94992 359 aaKnown RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 FMNL1O95466 1100 aaPredicted RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 HSPD1P10809 573 aaKnown RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 FERP16591 822 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 TPP2P29144 1249 aaPredicted RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 COPB1P53618 953 aaKnown RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 ANTXR2P58335 489 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 UAP1Q16222 522 aaPredicted RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 CDC37Q16543 378 aaPredicted RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 TUBB8Q3ZCM7 444 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 GLE1Q53GS7 698 aaKnown RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 PPP4R3AQ6IN85 833 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 CRELD2Q6UXH1 353 aaPredicted RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 GALNT15Q8N3T1 639 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 DBNDD2Q9BQY9 259 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 GABBR1Q9UBS5 961 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 NKX1-2Q9UD57 310 aaPredicted RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 SALL4Q9UJQ4 1053 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 STK38LQ9Y2H1 464 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 RFX7Q2KHR2 1363 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 PES1O00541 588 aaKnown RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 HGSO14964 777 aaPredicted RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 SHBGP04278 402 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 KRT16P08779 473 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 UBXN1Q04323 297 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 RNASELQ05823 741 aaKnown RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 FOXB2Q5VYV0 432 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 MIGA2Q7L4E1 593 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 CPLX4Q7Z7G2 160 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 GOPCQ9HD26 462 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 FBXO2Q9UK22 296 aaPredicted RBP11.8□□□□□ -0.52
RTN3-208ENST00000537981 MAP3K2Q9Y2U5 619 aa11.8□□□□□ -0.52
RTN3-208ENST00000537981 LTBP4Q8N2S1 1624 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 ITIH6Q6UXX5 1313 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 STRCP1A6NGW2 1772 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 M0R2C6 588 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 FLT3P36888 993 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 MXRA7P84157 204 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 TAF11Q15544 211 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 EPHA10Q5JZY3 1008 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 ZFYVE27Q5T4F4 411 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 DDX42Q86XP3 938 aaKnown RBP eCLIP11.79□□□□□ -0.52
RTN3-208ENST00000537981 NOC3LQ8WTT2 800 aaKnown RBP11.79□□□□□ -0.52
RTN3-208ENST00000537981 EPSTI1Q96J88 318 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 MYL10Q9BUA6 226 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 BLZF1Q9H2G9 400 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 TMEM94Q12767 1356 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 MST1RQ04912 1400 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 NRXN3Q9Y4C0 1643 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 ERCC5P28715 1186 aaPredicted RBP11.79□□□□□ -0.52
RTN3-208ENST00000537981 POLE2P56282 527 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 ZC3H6P61129 1189 aaKnown RBP11.79□□□□□ -0.52
RTN3-208ENST00000537981 PAK2Q13177 524 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 GKAP1Q5VSY0 366 aaPredicted RBP11.79□□□□□ -0.52
RTN3-208ENST00000537981 SPATA20Q8TB22 786 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 RPS6KC1Q96S38 1066 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 TAF1DQ9H5J8 278 aaPredicted RBP11.79□□□□□ -0.52
RTN3-208ENST00000537981 PCDHB6Q9Y5E3 794 aa11.79□□□□□ -0.52
RTN3-208ENST00000537981 PRAMEF22A3QJZ6 481 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 TRIM49BA6NDI0 452 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms