RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, human

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSDE1-215	ENST00000533818	TCTN1	Q2MV58	587 aa		12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	TMEM63B	Q5T3F8	832 aa		12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	CERS3	Q8IU89	383 aa		12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	TMEM192	Q8IY95	271 aa		12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	CPXCR1	Q8N123	301 aa		12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	CCDC155	Q8N6L0	562 aa		12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	KCNG4	Q8TDN1	519 aa		12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	MTG1	Q9BT17	334 aa	Predicted RBP	12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	IGFLR1	Q9H665	355 aa		12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	PTPRS	Q13332	1948 aa		12.83	□□□□□ -0.36
CSDE1-215	ENST00000533818	RAD21	O60216	631 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	EYA4	O95677	639 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	UBTFL1	P0CB47	393 aa	Predicted RBP	12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	SELP	P16109	830 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	ICAM3	P32942	547 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	ACAP1	Q15027	740 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	FAM83B	Q5T0W9	1011 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	NFRKB	Q6P4R8	1299 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	TMEM105	Q8N8V8	129 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	SP7	Q8TDD2	431 aa	Predicted RBP	12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	AFAP1L1	Q8TED9	768 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	RPGRIP1	Q96KN7	1286 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	DLL3	Q9NYJ7	618 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	FBXO40	Q9UH90	709 aa		12.82	□□□□□ -0.36
CSDE1-215	ENST00000533818	COL11A1	P12107	1806 aa	Predicted RBP	12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	FOCAD	Q5VW36	1801 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	ASB14	A6NK59	587 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	LINC01565	O15544	149 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	PARN	O95453	639 aa	Known RBP	12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	CXCL10	P02778	98 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	CYP2E1	P05181	493 aa	Predicted RBP	12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	GTF2F1	P35269	517 aa	Known RBP eCLIP	12.81	□□□□□ -0.36	1e-7	■■■■■ 29.4
CSDE1-215	ENST00000533818	HTRA4	P83105	476 aa	Predicted RBP	12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	PTPN21	Q16825	1174 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	TAPT1	Q6NXT6	567 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	LRRC8D	Q7L1W4	858 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	EEPD1	Q7L9B9	569 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	FBXO11	Q86XK2	927 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	CAGE1	Q8TC20	777 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	MSLNL	Q96KJ4	702 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	SLF1	Q9BQI6	1058 aa		12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	CTDP1	Q9Y5B0	961 aa	Predicted RBP	12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	MAP1B	P46821	2468 aa	Known RBP	12.81	□□□□□ -0.36
CSDE1-215	ENST00000533818	MYO7A	Q13402	2215 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	USP17L12	C9JPN9	530 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	USP17L21	D6R901	530 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	ATP2A1	O14983	1001 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	NBN	O60934	754 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	IGSF3	O75054	1194 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	ZBED4	O75132	1171 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	NDUFV1	P49821	464 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	CPT1A	P50416	773 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	EVX2	Q03828	476 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	PTPN11	Q06124	597 aa	Predicted RBP	12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	ADAM15	Q13444	863 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	12.8	□□□□□ -0.36	1e-12	■■■■□ 22.1
CSDE1-215	ENST00000533818	KIAA1211	Q6ZU35	1233 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	ZBTB33	Q86T24	672 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	MYOCD	Q8IZQ8	938 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	FAM133A	Q8N9E0	248 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	CHST13	Q8NET6	341 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	RAVER2	Q9HCJ3	691 aa	Known RBP	12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	GOPC	Q9HD26	462 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	INCENP	Q9NQS7	918 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	MYH1	P12882	1939 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	MCM3AP	O60318	1980 aa		12.8	□□□□□ -0.36
CSDE1-215	ENST00000533818	AMH	P03971	560 aa		12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	EEF2	P13639	858 aa	Known RBP	12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	AKR1B1	P15121	316 aa		12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	RRP1	P56182	461 aa	Known RBP	12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	PTGIS	Q16647	500 aa		12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	TTC39A	Q5SRH9	613 aa		12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	WDR63	Q8IWG1	891 aa		12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	FBXO16	Q8IX29	292 aa	Predicted RBP	12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	PRPF38A	Q8NAV1	312 aa	Known RBP	12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	YME1L1	Q96TA2	773 aa		12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	PHF7	Q9BWX1	381 aa	Predicted RBP	12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	PIH1D3	Q9NQM4	214 aa	Known RBP	12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	PCDHGC5	Q9Y5F6	944 aa		12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	DDX49	Q9Y6V7	483 aa	Known RBP	12.79	□□□□□ -0.36
CSDE1-215	ENST00000533818	CEP250	Q9BV73	2442 aa		12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	LMNA	P02545	664 aa	Known RBP	12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	CHMP4BP1	P59074	171 aa		12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	DUSP28	Q4G0W2	176 aa		12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	SMRP1	Q8NCR6	262 aa		12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	NUP88	Q99567	741 aa	Predicted RBP	12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	LMAN2L	Q9H0V9	348 aa		12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	HOMER2	Q9NSB8	354 aa		12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	MCM9	Q9NXL9	1143 aa		12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	USP15	Q9Y4E8	981 aa	Predicted RBP	12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	FRYL	O94915	3013 aa		12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	USP24	Q9UPU5	2620 aa		12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	PTPRC	P08575	1304 aa		12.78	□□□□□ -0.36
CSDE1-215	ENST00000533818	PARP14	Q460N5	1801 aa		12.77	□□□□□ -0.37
CSDE1-215	ENST00000533818	TANC1	Q9C0D5	1861 aa		12.77	□□□□□ -0.37
CSDE1-215	ENST00000533818		E9PSI1	815 aa		12.77	□□□□□ -0.37
CSDE1-215	ENST00000533818	IDH1	O75874	414 aa	Known RBP	12.77	□□□□□ -0.37
CSDE1-215	ENST00000533818	ZAP70	P43403	619 aa		12.77	□□□□□ -0.37

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