RNA–Protein interactions for RNA: ENST00000533196.1

SMPD1-209, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 3

Gene SMPD1, Length 425 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-209ENST00000533196 FBXO16Q8IX29 292 aaPredicted RBP27.38■■□□□ 1.97
SMPD1-209ENST00000533196 ADGRF4Q8IZF3 695 aa27.38■■□□□ 1.97
SMPD1-209ENST00000533196 PURBQ96QR8 312 aaKnown RBP27.38■■□□□ 1.97
SMPD1-209ENST00000533196 SEZ6LQ9BYH1 1024 aa27.38■■□□□ 1.97
SMPD1-209ENST00000533196 A0A0U1RQG5 324 aaPredicted RBP27.37■■□□□ 1.97
SMPD1-209ENST00000533196 CDK7P50613 346 aa27.37■■□□□ 1.97
SMPD1-209ENST00000533196 CYB5R4Q7L1T6 521 aa27.37■■□□□ 1.97
SMPD1-209ENST00000533196 EEPD1Q7L9B9 569 aa27.37■■□□□ 1.97
SMPD1-209ENST00000533196 NCOA7Q8NI08 942 aa27.37■■□□□ 1.97
SMPD1-209ENST00000533196 MAP4K1Q92918 833 aa27.37■■□□□ 1.97
SMPD1-209ENST00000533196 BADQ92934 168 aa27.37■■□□□ 1.97
SMPD1-209ENST00000533196 CPVLQ9H3G5 476 aa27.37■■□□□ 1.97
SMPD1-209ENST00000533196 PDGFCQ9NRA1 345 aa27.37■■□□□ 1.97
SMPD1-209ENST00000533196 RBM47A0AV96 593 aaKnown RBP27.36■■□□□ 1.97
SMPD1-209ENST00000533196 USH1GQ495M9 461 aa27.36■■□□□ 1.97
SMPD1-209ENST00000533196 KIAA1211Q6ZU35 1233 aa27.36■■□□□ 1.97
SMPD1-209ENST00000533196 RALYLQ86SE5 291 aaKnown RBP27.36■■□□□ 1.97
SMPD1-209ENST00000533196 MCF2L2Q86YR7 1114 aa27.36■■□□□ 1.97
SMPD1-209ENST00000533196 TMEM39AQ9NV64 488 aa27.36■■□□□ 1.97
SMPD1-209ENST00000533196 ERICH2A1L162 156 aa27.35■■□□□ 1.97
SMPD1-209ENST00000533196 ARVCFO00192 962 aa27.35■■□□□ 1.97
SMPD1-209ENST00000533196 DYNC1LI2O43237 492 aaPredicted RBP27.35■■□□□ 1.97
SMPD1-209ENST00000533196 DHX16O60231 1041 aaKnown RBP27.35■■□□□ 1.97
SMPD1-209ENST00000533196 EDNRBP24530 442 aa27.35■■□□□ 1.97
SMPD1-209ENST00000533196 IRX5P78411 483 aaPredicted RBP27.35■■□□□ 1.97
SMPD1-209ENST00000533196 FAAP100Q0VG06 881 aa27.35■■□□□ 1.97
SMPD1-209ENST00000533196 FSCN1Q16658 493 aaKnown RBP27.35■■□□□ 1.97
SMPD1-209ENST00000533196 DUSP28Q4G0W2 176 aa27.35■■□□□ 1.97
SMPD1-209ENST00000533196 VTI1AQ96AJ9 217 aa27.35■■□□□ 1.97
SMPD1-209ENST00000533196 JMJD4Q9H9V9 463 aa27.35■■□□□ 1.97
SMPD1-209ENST00000533196 RAG1P15918 1043 aa27.34■■□□□ 1.97
SMPD1-209ENST00000533196 PDE4DQ08499 809 aa27.34■■□□□ 1.97
SMPD1-209ENST00000533196 SART3Q15020 963 aaKnown RBP27.34■■□□□ 1.97
SMPD1-209ENST00000533196 QRICH1Q2TAL8 776 aa27.34■■□□□ 1.97
SMPD1-209ENST00000533196 FBXO11Q86XK2 927 aa27.34■■□□□ 1.97
SMPD1-209ENST00000533196 MRPL11Q9Y3B7 192 aaKnown RBP27.34■■□□□ 1.97
SMPD1-209ENST00000533196 DDX49Q9Y6V7 483 aaKnown RBP27.34■■□□□ 1.97
SMPD1-209ENST00000533196 E7EWF7 191 aa27.33■■□□□ 1.97
SMPD1-209ENST00000533196 BEX3Q00994 111 aa27.33■■□□□ 1.97
SMPD1-209ENST00000533196 IFIT3O14879 490 aaKnown RBP27.32■■□□□ 1.96
SMPD1-209ENST00000533196 NKRFO15226 690 aaKnown RBP eCLIP27.32■■□□□ 1.96
SMPD1-209ENST00000533196 CENPQQ7L2Z9 268 aaPredicted RBP27.32■■□□□ 1.96
SMPD1-209ENST00000533196 WDR11Q9BZH6 1224 aa27.32■■□□□ 1.96
SMPD1-209ENST00000533196 PALM3A6NDB9 673 aaPredicted RBP27.31■■□□□ 1.96
SMPD1-209ENST00000533196 KLRF2D3W0D1 207 aa27.31■■□□□ 1.96
SMPD1-209ENST00000533196 TLR3O15455 904 aaKnown RBP27.31■■□□□ 1.96
SMPD1-209ENST00000533196 STAG2Q8N3U4 1231 aa27.31■■□□□ 1.96
SMPD1-209ENST00000533196 SLC43A3Q8NBI5 491 aa27.31■■□□□ 1.96
SMPD1-209ENST00000533196 SCFD2Q8WU76 684 aa27.31■■□□□ 1.96
SMPD1-209ENST00000533196 MTMR8Q96EF0 704 aa27.31■■□□□ 1.96
SMPD1-209ENST00000533196 AMNQ9BXJ7 453 aa27.31■■□□□ 1.96
SMPD1-209ENST00000533196 VAT1LQ9HCJ6 419 aa27.31■■□□□ 1.96
SMPD1-209ENST00000533196 MAD2L2Q9UI95 211 aa27.31■■□□□ 1.96
SMPD1-209ENST00000533196 TBX21Q9UL17 535 aa27.31■■□□□ 1.96
SMPD1-209ENST00000533196 ITGB8P26012 769 aa27.3■■□□□ 1.96
SMPD1-209ENST00000533196 TRAF1Q13077 416 aa27.3■■□□□ 1.96
SMPD1-209ENST00000533196 WTAPQ15007 396 aa27.3■■□□□ 1.96
SMPD1-209ENST00000533196 CXCL17Q6UXB2 119 aa27.3■■□□□ 1.96
SMPD1-209ENST00000533196 FAM126BQ8IXS8 530 aa27.3■■□□□ 1.96
SMPD1-209ENST00000533196 SAMD3Q8N6K7 520 aa27.3■■□□□ 1.96
SMPD1-209ENST00000533196 MTA3Q9BTC8 594 aa27.3■■□□□ 1.96
SMPD1-209ENST00000533196 RBM8AQ9Y5S9 174 aaKnown RBP27.3■■□□□ 1.96
SMPD1-209ENST00000533196 TIMP1P01033 207 aa27.29■■□□□ 1.96
SMPD1-209ENST00000533196 CPT1AP50416 773 aa27.29■■□□□ 1.96
SMPD1-209ENST00000533196 GRM4Q14833 912 aa27.29■■□□□ 1.96
SMPD1-209ENST00000533196 SHHQ15465 462 aa27.29■■□□□ 1.96
SMPD1-209ENST00000533196 SYTL5Q8TDW5 730 aaPredicted RBP27.29■■□□□ 1.96
SMPD1-209ENST00000533196 NSUN6Q8TEA1 469 aaKnown RBP27.29■■□□□ 1.96
SMPD1-209ENST00000533196 POLR3EQ9NVU0 708 aa27.29■■□□□ 1.96
SMPD1-209ENST00000533196 MAP3K20Q9NYL2 800 aaKnown RBP27.29■■□□□ 1.96
SMPD1-209ENST00000533196 ZBTB5O15062 677 aa27.28■■□□□ 1.96
SMPD1-209ENST00000533196 GHRHRQ02643 423 aa27.28■■□□□ 1.96
SMPD1-209ENST00000533196 FPGSQ05932 587 aa27.28■■□□□ 1.96
SMPD1-209ENST00000533196 PPP2R5BQ15173 497 aa27.28■■□□□ 1.96
SMPD1-209ENST00000533196 BRDTQ58F21 947 aaPredicted RBP27.28■■□□□ 1.96
SMPD1-209ENST00000533196 FAM109BQ6ICB4 259 aaPredicted RBP27.28■■□□□ 1.96
SMPD1-209ENST00000533196 STOX1Q6ZVD7 989 aa27.28■■□□□ 1.96
SMPD1-209ENST00000533196 MB21D2Q8IYB1 491 aaPredicted RBP27.28■■□□□ 1.96
SMPD1-209ENST00000533196 IWS1Q96ST2 819 aa27.28■■□□□ 1.96
SMPD1-209ENST00000533196 BAZ2BQ9UIF8 2168 aaKnown RBP27.28■■□□□ 1.96
SMPD1-209ENST00000533196 ITGA7Q13683 1181 aa27.27■■□□□ 1.96
SMPD1-209ENST00000533196 BMP2KLQ5H9B9 411 aa27.27■■□□□ 1.96
SMPD1-209ENST00000533196 C9orf50Q5SZB4 431 aa27.27■■□□□ 1.96
SMPD1-209ENST00000533196 TMEM63BQ5T3F8 832 aa27.27■■□□□ 1.96
SMPD1-209ENST00000533196 DEFB123Q8N688 67 aa27.27■■□□□ 1.96
SMPD1-209ENST00000533196 RIOX1Q9H6W3 641 aa27.27■■□□□ 1.96
SMPD1-209ENST00000533196 TAF6LQ9Y6J9 622 aa27.27■■□□□ 1.96
SMPD1-209ENST00000533196 KIAA1217Q5T5P2 1943 aa27.27■■□□□ 1.96
SMPD1-209ENST00000533196 CD4P01730 458 aa27.26■■□□□ 1.95
SMPD1-209ENST00000533196 TROAPQ12815 778 aa27.26■■□□□ 1.95
SMPD1-209ENST00000533196 TTLL4Q14679 1199 aa27.26■■□□□ 1.95
SMPD1-209ENST00000533196 TBC1D5Q92609 795 aa27.26■■□□□ 1.95
SMPD1-209ENST00000533196 ESYT1Q9BSJ8 1104 aa27.26■■□□□ 1.95
SMPD1-209ENST00000533196 LSG1Q9H089 658 aaKnown RBP27.26■■□□□ 1.95
SMPD1-209ENST00000533196 TMEM67Q5HYA8 995 aa27.25■■□□□ 1.95
SMPD1-209ENST00000533196 MFSD5Q6N075 450 aa27.25■■□□□ 1.95
SMPD1-209ENST00000533196 CATIPQ7Z7H3 387 aa27.25■■□□□ 1.95
SMPD1-209ENST00000533196 OR6J1Q8NGC5 347 aa27.25■■□□□ 1.95
SMPD1-209ENST00000533196 IGDCC4Q8TDY8 1250 aa27.25■■□□□ 1.95
SMPD1-209ENST00000533196 TAAR1Q96RJ0 339 aa27.25■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms