RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 UBXN2AP68543 259 aa28.68■■■□□ 2.18
USP48-214ENST00000532737 RABEP1Q15276 862 aa28.68■■■□□ 2.18
USP48-214ENST00000532737 MTFR1Q15390 333 aa28.68■■■□□ 2.18
USP48-214ENST00000532737 PPFIA3O75145 1194 aa28.67■■■□□ 2.18
USP48-214ENST00000532737 LARGE1O95461 756 aa28.67■■■□□ 2.18
USP48-214ENST00000532737 IFNAR1P17181 557 aa28.67■■■□□ 2.18
USP48-214ENST00000532737 EN2P19622 333 aaPredicted RBP28.67■■■□□ 2.18
USP48-214ENST00000532737 SCRN1Q12765 414 aa28.67■■■□□ 2.18
USP48-214ENST00000532737 MFSD14CQ5VZR4 134 aa28.67■■■□□ 2.18
USP48-214ENST00000532737 MCF2L2Q86YR7 1114 aa28.67■■■□□ 2.18
USP48-214ENST00000532737 PHKBQ93100 1093 aa28.67■■■□□ 2.18
USP48-214ENST00000532737 SLKQ9H2G2 1235 aaPredicted RBP28.67■■■□□ 2.18
USP48-214ENST00000532737 CACNB2Q08289 660 aaPredicted RBP28.66■■■□□ 2.18
USP48-214ENST00000532737 ME3Q16798 604 aa28.66■■■□□ 2.18
USP48-214ENST00000532737 MAP3K21Q5TCX8 1036 aa28.66■■■□□ 2.18
USP48-214ENST00000532737 ZNF467Q7Z7K2 595 aaPredicted RBP28.66■■■□□ 2.18
USP48-214ENST00000532737 GPKOWQ92917 476 aaPredicted RBP eCLIP28.66■■■□□ 2.184e-6■□□□□ 9.1
USP48-214ENST00000532737 TINF2Q9BSI4 451 aa28.66■■■□□ 2.18
USP48-214ENST00000532737 MYH6P13533 1939 aa28.66■■■□□ 2.18
USP48-214ENST00000532737 ASTN1O14525 1302 aa28.66■■■□□ 2.18
USP48-214ENST00000532737 PRPF3O43395 683 aaKnown RBP28.65■■■□□ 2.18
USP48-214ENST00000532737 PRKAR2AP13861 404 aaKnown RBP28.65■■■□□ 2.18
USP48-214ENST00000532737 SYTL5Q8TDW5 730 aaPredicted RBP28.65■■■□□ 2.18
USP48-214ENST00000532737 MAF1Q9H063 256 aa28.65■■■□□ 2.18
USP48-214ENST00000532737 CFBP00751 764 aa28.64■■■□□ 2.18
USP48-214ENST00000532737 CCL5P13501 91 aa28.64■■■□□ 2.18
USP48-214ENST00000532737 GHRHRQ02643 423 aa28.64■■■□□ 2.18
USP48-214ENST00000532737 WWC2Q6AWC2 1192 aa28.64■■■□□ 2.18
USP48-214ENST00000532737 MAMDC4Q6UXC1 1216 aa28.64■■■□□ 2.18
USP48-214ENST00000532737 HEATR3Q7Z4Q2 680 aa28.64■■■□□ 2.18
USP48-214ENST00000532737 NECAB1Q8N987 351 aa28.64■■■□□ 2.18
USP48-214ENST00000532737 UNC93B1Q9H1C4 597 aa28.64■■■□□ 2.18
USP48-214ENST00000532737 COL20A1Q9P218 1284 aa28.64■■■□□ 2.18
USP48-214ENST00000532737 PCDH10Q9P2E7 1040 aa28.64■■■□□ 2.18
USP48-214ENST00000532737 CPLX1O14810 134 aa28.63■■■□□ 2.17
USP48-214ENST00000532737 HSD17B4P51659 736 aa28.63■■■□□ 2.17
USP48-214ENST00000532737 PKN1Q16512 942 aa28.63■■■□□ 2.17
USP48-214ENST00000532737 SLC26A6Q9BXS9 759 aa28.63■■■□□ 2.17
USP48-214ENST00000532737 LIMCH1Q9UPQ0 1083 aa28.63■■■□□ 2.17
USP48-214ENST00000532737 PFKFB3Q16875 520 aaPredicted RBP28.62■■■□□ 2.17
USP48-214ENST00000532737 PRAMEF19Q5SWL8 479 aa28.62■■■□□ 2.17
USP48-214ENST00000532737 MSL3Q8N5Y2 521 aaKnown RBP28.62■■■□□ 2.17
USP48-214ENST00000532737 TRPV1Q8NER1 839 aa28.62■■■□□ 2.17
USP48-214ENST00000532737 RNF26Q9BY78 433 aaPredicted RBP28.62■■■□□ 2.17
USP48-214ENST00000532737 DDX49Q9Y6V7 483 aaKnown RBP28.62■■■□□ 2.17
USP48-214ENST00000532737 SNAI1O95863 264 aaPredicted RBP28.61■■■□□ 2.17
USP48-214ENST00000532737 HOXA13P31271 388 aaPredicted RBP28.61■■■□□ 2.17
USP48-214ENST00000532737 TYW1BQ6NUM6 668 aa28.61■■■□□ 2.17
USP48-214ENST00000532737 CPLX2Q6PUV4 134 aaKnown RBP28.61■■■□□ 2.17
USP48-214ENST00000532737 GTF3C6Q969F1 213 aa28.61■■■□□ 2.17
USP48-214ENST00000532737 TAAR1Q96RJ0 339 aa28.61■■■□□ 2.17
USP48-214ENST00000532737 TMEM106CQ9BVX2 250 aa28.61■■■□□ 2.17
USP48-214ENST00000532737 ADD3Q9UEY8 706 aaKnown RBP28.61■■■□□ 2.17
USP48-214ENST00000532737 RPTORQ8N122 1335 aa28.61■■■□□ 2.17
USP48-214ENST00000532737 PLXNA1Q9UIW2 1896 aa28.6■■■□□ 2.17
USP48-214ENST00000532737 GCOM1H8Y6P7 765 aaPredicted RBP28.6■■■□□ 2.17
USP48-214ENST00000532737 DTNBO60941 627 aa28.6■■■□□ 2.17
USP48-214ENST00000532737 POLR2MP0CAP2 368 aa28.6■■■□□ 2.17
USP48-214ENST00000532737 SCG2P13521 617 aa28.6■■■□□ 2.17
USP48-214ENST00000532737 CCND3P30281 292 aaPredicted RBP28.6■■■□□ 2.17
USP48-214ENST00000532737 ALDH5A1P51649 535 aaPredicted RBP28.6■■■□□ 2.17
USP48-214ENST00000532737 AKAP17AQ02040 695 aaKnown RBP28.6■■■□□ 2.17
USP48-214ENST00000532737 ARMCX2Q7L311 632 aa28.6■■■□□ 2.17
USP48-214ENST00000532737 RNF208Q9H0X6 261 aa28.6■■■□□ 2.17
USP48-214ENST00000532737 HMX1Q9NP08 348 aaPredicted RBP28.6■■■□□ 2.17
USP48-214ENST00000532737 CDKN2AIPQ9NXV6 580 aaPredicted RBP28.6■■■□□ 2.17
USP48-214ENST00000532737 BARHL2Q9NY43 387 aa28.6■■■□□ 2.17
USP48-214ENST00000532737 MAP3K20Q9NYL2 800 aaKnown RBP28.6■■■□□ 2.17
USP48-214ENST00000532737 RBM27Q9P2N5 1060 aaKnown RBP28.6■■■□□ 2.17
USP48-214ENST00000532737 SYNGAP1Q96PV0 1343 aa28.6■■■□□ 2.17
USP48-214ENST00000532737 STXBP3O00186 592 aa28.59■■■□□ 2.17
USP48-214ENST00000532737 CTDNEP1O95476 244 aa28.59■■■□□ 2.17
USP48-214ENST00000532737 CYBAP13498 195 aa28.59■■■□□ 2.17
USP48-214ENST00000532737 SSRP1Q08945 709 aaKnown RBP28.59■■■□□ 2.17
USP48-214ENST00000532737 ST3GAL1Q11201 340 aa28.59■■■□□ 2.17
USP48-214ENST00000532737 SAMD3Q8N6K7 520 aa28.59■■■□□ 2.17
USP48-214ENST00000532737 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.59■■■□□ 2.17
USP48-214ENST00000532737 ASB14A6NK59 587 aa28.58■■■□□ 2.17
USP48-214ENST00000532737 TRIM22Q8IYM9 498 aa28.58■■■□□ 2.17
USP48-214ENST00000532737 DNERQ8NFT8 737 aa28.58■■■□□ 2.17
USP48-214ENST00000532737 PSTPIP2Q9H939 334 aa28.58■■■□□ 2.17
USP48-214ENST00000532737 LCTP09848 1927 aa28.58■■■□□ 2.17
USP48-214ENST00000532737 hCG_1984214I3L0E3 225 aa28.57■■■□□ 2.16
USP48-214ENST00000532737 ST18O60284 1047 aa28.57■■■□□ 2.16
USP48-214ENST00000532737 NAPAP54920 295 aa28.57■■■□□ 2.16
USP48-214ENST00000532737 USP17L6PQ6QN14 398 aa28.57■■■□□ 2.16
USP48-214ENST00000532737 ZNF713Q8N859 430 aaPredicted RBP28.57■■■□□ 2.16
USP48-214ENST00000532737 MORC4Q8TE76 937 aa28.57■■■□□ 2.16
USP48-214ENST00000532737 PAK6Q9NQU5 681 aaPredicted RBP28.57■■■□□ 2.16
USP48-214ENST00000532737 MEIS2O14770 477 aa28.56■■■□□ 2.16
USP48-214ENST00000532737 CEP290O15078 2479 aa28.56■■■□□ 2.16
USP48-214ENST00000532737 CDKL5O76039 1030 aa28.56■■■□□ 2.16
USP48-214ENST00000532737 CD2BP2O95400 341 aaKnown RBP28.56■■■□□ 2.16
USP48-214ENST00000532737 PPP1R18Q6NYC8 613 aa28.56■■■□□ 2.16
USP48-214ENST00000532737 FCHSD1Q86WN1 690 aa28.56■■■□□ 2.16
USP48-214ENST00000532737 IL27Q8NEV9 243 aa28.56■■■□□ 2.16
USP48-214ENST00000532737 ZSCAN31Q96LW9 406 aaPredicted RBP28.56■■■□□ 2.16
USP48-214ENST00000532737 RMDN3Q96TC7 470 aa28.56■■■□□ 2.16
USP48-214ENST00000532737 NRBP1Q9UHY1 535 aa28.56■■■□□ 2.16
USP48-214ENST00000532737 CNPY2Q9Y2B0 182 aa28.56■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms