RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	ZNF536	O15090	1300 aa		10.83	□□□□□ -0.68
NXF1-209	ENST00000531474	CNTNAP5	Q8WYK1	1306 aa		10.83	□□□□□ -0.68
NXF1-209	ENST00000531474	PARP14	Q460N5	1801 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	hCG_1642624	A0A1W2PR95	340 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	TNPO2	O14787	897 aa	Known RBP	10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	ATP2A1	O14983	1001 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	ZBTB5	O15062	677 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	DEXI	O95424	95 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	SLC25A27	O95847	323 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	ALAS1	P13196	640 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	ERCC3	P19447	782 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	SMARCA1	P28370	1054 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	MAPK4	P31152	587 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	COPB2	P35606	906 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	PSMC4	P43686	418 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	FCGRT	P55899	365 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	FUT2	Q10981	343 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	GNL2	Q13823	731 aa	Known RBP	10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	NTRK3	Q16288	839 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	USH1G	Q495M9	461 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	FBXO11	Q86XK2	927 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	RIOX2	Q8IUF8	465 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	SHCBP1	Q8NEM2	672 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	MTMR8	Q96EF0	704 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	ARHGAP39	Q9C0H5	1083 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	MROH8	Q9H579	483 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	RNF146	Q9NTX7	359 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	POLR3E	Q9NVU0	708 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	PNMA2	Q9UL42	364 aa		10.82	□□□□□ -0.68
NXF1-209	ENST00000531474	PNMA6F	A0A0J9YX94	578 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	PPFIA3	O75145	1194 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	CCDC192	P0DO97	292 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	CTGF	P29279	349 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	SF3A1	Q15459	793 aa	Known RBP	10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	TKFC	Q3LXA3	575 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	ADAL	Q6DHV7	355 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	GPR142	Q7Z601	462 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	PLEKHH3	Q7Z736	793 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	BICD2	Q8TD16	824 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	PHKB	Q93100	1093 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	TRIM44	Q96DX7	344 aa	Predicted RBP	10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	TRIM47	Q96LD4	638 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	AMN	Q9BXJ7	453 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	SLC26A6	Q9BXS9	759 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	RNF26	Q9BY78	433 aa	Predicted RBP	10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	NUP62CL	Q9H1M0	184 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	RIPK3	Q9Y572	518 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474		V9GY48	417 aa	Predicted RBP	10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	ABCB11	O95342	1321 aa		10.81	□□□□□ -0.68
NXF1-209	ENST00000531474	CEP350	Q5VT06	3117 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474		A0A1W2PQ27	194 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474		A0A1W2PQ64	194 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474		A0A1W2PQD8	194 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	PRPF3	O43395	683 aa	Known RBP	10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	PPP1R11	O60927	126 aa	Predicted RBP	10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	U2AF2	P26368	475 aa	Known RBP eCLIP	10.8	□□□□□ -0.68	5e-13	■■■■□ 19.5
NXF1-209	ENST00000531474	CAP1	Q01518	475 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	TRAF1	Q13077	416 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	ARHGEF6	Q15052	776 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	HS1BP3	Q53T59	392 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	MYSM1	Q5VVJ2	828 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	KRT40	Q6A162	431 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	FAM173B	Q6P4H8	233 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	CCDC73	Q6ZRK6	1079 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	HEATR3	Q7Z4Q2	680 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	FAM177A1	Q8N128	213 aa	Predicted RBP	10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	CHST13	Q8NET6	341 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	COA7	Q96BR5	231 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	TRERF1	Q96PN7	1200 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	PPP1R9B	Q96SB3	815 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	MMP19	Q99542	508 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	RBSN	Q9H1K0	784 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	FOXP1	Q9H334	677 aa	Predicted RBP	10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	ACAD9	Q9H845	621 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	FBXO40	Q9UH90	709 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	PCDHA1	Q9Y5I3	950 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	IVNS1ABP	Q9Y6Y0	642 aa		10.8	□□□□□ -0.68
NXF1-209	ENST00000531474	DTNB	O60941	627 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	FCER1A	P12319	257 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	GUCY1B3	Q02153	619 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	KCTD2	Q14681	263 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	STK38	Q15208	465 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	MUM1L1	Q5H9M0	696 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	LINC00301	Q8NCQ3	95 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	TNMD	Q9H2S6	317 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	CLSTN2	Q9H4D0	955 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	MRPL11	Q9Y3B7	192 aa	Known RBP	10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	TRIM17	Q9Y577	477 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	MYH15	Q9Y2K3	1946 aa		10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	COL11A1	P12107	1806 aa	Predicted RBP	10.79	□□□□□ -0.68
NXF1-209	ENST00000531474	SLC15A5	A6NIM6	579 aa		10.78	□□□□□ -0.68
NXF1-209	ENST00000531474	NFIB	O00712	420 aa		10.78	□□□□□ -0.68
NXF1-209	ENST00000531474	SPTLC2	O15270	562 aa		10.78	□□□□□ -0.68
NXF1-209	ENST00000531474	PPP6R2	O75170	966 aa		10.78	□□□□□ -0.68
NXF1-209	ENST00000531474	SCG2	P13521	617 aa		10.78	□□□□□ -0.68
NXF1-209	ENST00000531474	PTPRE	P23469	700 aa		10.78	□□□□□ -0.68
NXF1-209	ENST00000531474	HOXD10	P28358	340 aa		10.78	□□□□□ -0.68
NXF1-209	ENST00000531474	ME1	P48163	572 aa		10.78	□□□□□ -0.68
NXF1-209	ENST00000531474	PRKCZ	Q05513	592 aa		10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms