RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MMTAG2Q9BU76 263 aaKnown RBP21.52■■□□□ 1.04
VPS28-213ENST00000530983 VPS18Q9P253 973 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 SMCO2A6NFE2 343 aa21.51■■□□□ 1.03
VPS28-213ENST00000530983 CYLC1P35663 651 aaPredicted RBP21.51■■□□□ 1.03
VPS28-213ENST00000530983 RC3H1Q5TC82 1133 aaKnown RBP21.51■■□□□ 1.03
VPS28-213ENST00000530983 AMIGO3Q86WK7 504 aa21.51■■□□□ 1.03
VPS28-213ENST00000530983 ZSCAN29Q8IWY8 852 aaPredicted RBP21.51■■□□□ 1.03
VPS28-213ENST00000530983 EIF3CLB5ME19 914 aaKnown RBP21.51■■□□□ 1.03
VPS28-213ENST00000530983 GNPATO15228 680 aa21.51■■□□□ 1.03
VPS28-213ENST00000530983 KRT86O43790 486 aa21.51■■□□□ 1.03
VPS28-213ENST00000530983 TECP42680 631 aa21.51■■□□□ 1.03
VPS28-213ENST00000530983 NEK8Q86SG6 692 aa21.51■■□□□ 1.03
VPS28-213ENST00000530983 CCDC47Q96A33 483 aaKnown RBP21.51■■□□□ 1.03
VPS28-213ENST00000530983 EIF3CQ99613 913 aaKnown RBP21.51■■□□□ 1.03
VPS28-213ENST00000530983 RTFDC1Q9BY42 306 aaPredicted RBP21.51■■□□□ 1.03
VPS28-213ENST00000530983 LRRIQ3A6PVS8 624 aaPredicted RBP21.5■■□□□ 1.03
VPS28-213ENST00000530983 USP14P54578 494 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 NFIXQ14938 502 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 FAM114A1Q8IWE2 563 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 CCDC170Q8IYT3 715 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 KIAA0895Q8NCT3 520 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 EHBP1Q8NDI1 1231 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 NOC4LQ9BVI4 516 aaKnown RBP21.5■■□□□ 1.03
VPS28-213ENST00000530983 C6orf50Q9HD87 102 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 ZNHIT6Q9NWK9 470 aaKnown RBP21.5■■□□□ 1.03
VPS28-213ENST00000530983 MTIF2P46199 727 aaKnown RBP21.5■■□□□ 1.03
VPS28-213ENST00000530983 LMAN1P49257 510 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 USP17L2Q6R6M4 530 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 IPO4Q8TEX9 1081 aaKnown RBP21.5■■□□□ 1.03
VPS28-213ENST00000530983 HPS3Q969F9 1004 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 ERGIC2Q96RQ1 377 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 EYA3Q99504 573 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 LEMD3Q9Y2U8 911 aa21.5■■□□□ 1.03
VPS28-213ENST00000530983 GNA11P29992 359 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 CDK8P49336 464 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 ZSCAN26Q16670 478 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 FAM98CQ17RN3 349 aaKnown RBP21.49■■□□□ 1.03
VPS28-213ENST00000530983 COBLL1Q53SF7 1204 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 FIGNQ5HY92 759 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 GPR101Q96P66 508 aaPredicted RBP21.49■■□□□ 1.03
VPS28-213ENST00000530983 RNF216Q9NWF9 866 aaPredicted RBP21.49■■□□□ 1.03
VPS28-213ENST00000530983 DUSP10Q9Y6W6 482 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 PPP1R2P41236 205 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 C16orf86Q6ZW13 317 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 TBCKQ8TEA7 893 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 PURBQ96QR8 312 aaKnown RBP21.49■■□□□ 1.03
VPS28-213ENST00000530983 SEMA6BQ9H3T3 888 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 FAN1Q9Y2M0 1017 aa21.49■■□□□ 1.03
VPS28-213ENST00000530983 A0A1W2PQJ5 194 aa21.48■■□□□ 1.03
VPS28-213ENST00000530983 CYP27A1Q02318 531 aa21.48■■□□□ 1.03
VPS28-213ENST00000530983 POTEDQ86YR6 584 aa21.48■■□□□ 1.03
VPS28-213ENST00000530983 NEDD1Q8NHV4 660 aa21.48■■□□□ 1.03
VPS28-213ENST00000530983 RRP36Q96EU6 259 aaKnown RBP21.48■■□□□ 1.03
VPS28-213ENST00000530983 CAPZA3Q96KX2 299 aa21.48■■□□□ 1.03
VPS28-213ENST00000530983 ZNF287Q9HBT7 754 aa21.48■■□□□ 1.03
VPS28-213ENST00000530983 LTBP4Q8N2S1 1624 aa21.47■■□□□ 1.03
VPS28-213ENST00000530983 LDHCP07864 332 aa21.47■■□□□ 1.03
VPS28-213ENST00000530983 CDK17Q00537 523 aa21.47■■□□□ 1.03
VPS28-213ENST00000530983 AMPD3Q01432 767 aa21.47■■□□□ 1.03
VPS28-213ENST00000530983 CNNM4Q6P4Q7 775 aa21.47■■□□□ 1.03
VPS28-213ENST00000530983 PCMTD1Q96MG8 357 aaPredicted RBP21.47■■□□□ 1.03
VPS28-213ENST00000530983 ZNF263O14978 683 aa21.47■■□□□ 1.03
VPS28-213ENST00000530983 IPO7O95373 1038 aaKnown RBP21.47■■□□□ 1.03
VPS28-213ENST00000530983 BTDP43251 543 aa21.47■■□□□ 1.03
VPS28-213ENST00000530983 GRAPQ13588 217 aa21.47■■□□□ 1.03
VPS28-213ENST00000530983 ZNF804AQ7Z570 1209 aa21.47■■□□□ 1.03
VPS28-213ENST00000530983 GRAPLQ8TC17 118 aaPredicted RBP21.47■■□□□ 1.03
VPS28-213ENST00000530983 PIGSQ96S52 555 aa21.47■■□□□ 1.03
VPS28-213ENST00000530983 ANO9A1A5B4 782 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 CENPPQ6IPU0 288 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 ARHGEF1Q92888 912 aaKnown RBP21.46■■□□□ 1.03
VPS28-213ENST00000530983 VAT1LQ9HCJ6 419 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 SLC39A2Q9NP94 309 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 BLOC1S4Q9NUP1 217 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 BIN2Q9UBW5 565 aaPredicted RBP21.46■■□□□ 1.03
VPS28-213ENST00000530983 SEC63Q9UGP8 760 aaKnown RBP21.46■■□□□ 1.03
VPS28-213ENST00000530983 BTAF1O14981 1849 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 PDE4CQ08493 712 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 GRB10Q13322 594 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 SOGA3Q5TF21 947 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 CCDC102AQ96A19 550 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 CEP95Q96GE4 821 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 CALML4Q96GE6 196 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 RPGRIP1Q96KN7 1286 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 TMEM260Q9NX78 707 aa21.46■■□□□ 1.03
VPS28-213ENST00000530983 ZNF185O15231 689 aa21.45■■□□□ 1.02
VPS28-213ENST00000530983 PLEKP08567 350 aaPredicted RBP21.45■■□□□ 1.02
VPS28-213ENST00000530983 TXKP42681 527 aa21.45■■□□□ 1.02
VPS28-213ENST00000530983 VAV2P52735 878 aa21.45■■□□□ 1.02
VPS28-213ENST00000530983 CKAP4Q07065 602 aaKnown RBP21.45■■□□□ 1.02
VPS28-213ENST00000530983 REXO1Q8N1G1 1221 aaKnown RBP21.45■■□□□ 1.02
VPS28-213ENST00000530983 FAM71BQ8TC56 605 aa21.45■■□□□ 1.02
VPS28-213ENST00000530983 MTMR9Q96QG7 549 aa21.45■■□□□ 1.02
VPS28-213ENST00000530983 LCMT1Q9UIC8 334 aa21.45■■□□□ 1.02
VPS28-213ENST00000530983 MACROD2A1Z1Q3 448 aa21.45■■□□□ 1.02
VPS28-213ENST00000530983 PDE2AO00408 941 aaPredicted RBP21.45■■□□□ 1.02
VPS28-213ENST00000530983 SMARCA1P28370 1054 aa21.45■■□□□ 1.02
VPS28-213ENST00000530983 FKBP15Q5T1M5 1219 aa21.45■■□□□ 1.02
VPS28-213ENST00000530983 RTCBQ9Y3I0 505 aaKnown RBP21.45■■□□□ 1.02
VPS28-213ENST00000530983 GPR75-ASB3A0A0A6YYF3 556 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms