RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 DDX11Q96FC9 970 aa16.16■□□□□ 0.18
USF1-209ENST00000529476 CYP39A1Q9NYL5 469 aa16.16■□□□□ 0.18
USF1-209ENST00000529476 RBM27Q9P2N5 1060 aaKnown RBP16.16■□□□□ 0.18
USF1-209ENST00000529476 PTPDC1A2A3K4 754 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 STXBP3O00186 592 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 JAK2O60674 1132 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 RGS2P41220 211 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 PRMT2P55345 433 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 BAATQ14032 418 aaPredicted RBP16.15■□□□□ 0.18
USF1-209ENST00000529476 TYW1BQ6NUM6 668 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 RNF207Q6ZRF8 634 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 DPP9Q86TI2 863 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 NPLOC4Q8TAT6 608 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 BARHL2Q9NY43 387 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 PTCH2Q9Y6C5 1203 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 PFASO15067 1338 aa16.15■□□□□ 0.18
USF1-209ENST00000529476 DNAJC25-GNG10A0A024R161 153 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 DEXIO95424 95 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 CFBP00751 764 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 FDPSP14324 419 aaKnown RBP16.14■□□□□ 0.17
USF1-209ENST00000529476 CALML3P27482 149 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 NAPAP54920 295 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 RPS6P62753 249 aaKnown RBP16.14■□□□□ 0.17
USF1-209ENST00000529476 CNTN2Q02246 1040 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 IRF5Q13568 498 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 MCF2L2Q86YR7 1114 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 RGS22Q8NE09 1264 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 RAET1EQ8TD07 263 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 AIFM3Q96NN9 605 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 PURBQ96QR8 312 aaKnown RBP16.14■□□□□ 0.17
USF1-209ENST00000529476 APBA2Q99767 749 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 ORC3Q9UBD5 711 aaPredicted RBP16.14■□□□□ 0.17
USF1-209ENST00000529476 STK36Q9NRP7 1315 aa16.14■□□□□ 0.17
USF1-209ENST00000529476 POTEB2H3BUK9 544 aa16.13■□□□□ 0.17
USF1-209ENST00000529476 hCG_1984214I3L0E3 225 aa16.13■□□□□ 0.17
USF1-209ENST00000529476 HOXC6P09630 235 aa16.13■□□□□ 0.17
USF1-209ENST00000529476 CCL14Q16627 93 aa16.13■□□□□ 0.17
USF1-209ENST00000529476 ZNF792Q3KQV3 632 aa16.13■□□□□ 0.17
USF1-209ENST00000529476 ZNF713Q8N859 430 aaPredicted RBP16.13■□□□□ 0.17
USF1-209ENST00000529476 SLC17A8Q8NDX2 589 aa16.13■□□□□ 0.17
USF1-209ENST00000529476 SNX21Q969T3 373 aa16.13■□□□□ 0.17
USF1-209ENST00000529476 SHISA4Q96DD7 197 aa16.13■□□□□ 0.17
USF1-209ENST00000529476 TMEM106CQ9BVX2 250 aa16.13■□□□□ 0.17
USF1-209ENST00000529476 VPS54Q9P1Q0 977 aa16.13■□□□□ 0.17
USF1-209ENST00000529476 SOWAHBA6NEL2 793 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 ADCY3O60266 1144 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 XRCC5P13010 732 aaKnown RBP16.12■□□□□ 0.17
USF1-209ENST00000529476 ELNP15502 786 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 HOXA13P31271 388 aaPredicted RBP16.12■□□□□ 0.17
USF1-209ENST00000529476 HSD17B4P51659 736 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 PPP1R18Q6NYC8 613 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 FAM133AQ8N9E0 248 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 SMARCC2Q8TAQ2 1214 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 SYTL5Q8TDW5 730 aaPredicted RBP16.12■□□□□ 0.17
USF1-209ENST00000529476 ZNF333Q96JL9 665 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 FGD4Q96M96 766 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 LLPHQ9BRT6 129 aaKnown RBP16.12■□□□□ 0.17
USF1-209ENST00000529476 PSTPIP2Q9H939 334 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 SLC5A4Q9NY91 659 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 FLRT1Q9NZU1 646 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 COL20A1Q9P218 1284 aa16.12■□□□□ 0.17
USF1-209ENST00000529476 MCM3APO60318 1980 aa16.11■□□□□ 0.17
USF1-209ENST00000529476 GCOM1H8Y6P7 765 aaPredicted RBP16.11■□□□□ 0.17
USF1-209ENST00000529476 K7ELQ4 463 aaPredicted RBP16.11■□□□□ 0.17
USF1-209ENST00000529476 POLR2MP0CAP2 368 aa16.11■□□□□ 0.17
USF1-209ENST00000529476 GHRHRQ02643 423 aa16.11■□□□□ 0.17
USF1-209ENST00000529476 USP17L6PQ6QN14 398 aa16.11■□□□□ 0.17
USF1-209ENST00000529476 CHRDL2Q6WN34 429 aa16.11■□□□□ 0.17
USF1-209ENST00000529476 TRIB2Q92519 343 aa16.11■□□□□ 0.17
USF1-209ENST00000529476 MAML3Q96JK9 1138 aa16.11■□□□□ 0.17
USF1-209ENST00000529476 DIS3Q9Y2L1 958 aaKnown RBP16.11■□□□□ 0.17
USF1-209ENST00000529476 ASTN1O14525 1302 aa16.11■□□□□ 0.17
USF1-209ENST00000529476 SMCO2A6NFE2 343 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 MEIS2O14770 477 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 ADCY7P51828 1080 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 CUL4AQ13619 759 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 UBE2SQ16763 222 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 HSCBQ8IWL3 235 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 SAMD3Q8N6K7 520 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 WASF1Q92558 559 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 TAAR1Q96RJ0 339 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 ALG1Q9BT22 464 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 MAF1Q9H063 256 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 RIC8AQ9NPQ8 531 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 SH3GLB2Q9NR46 395 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 GJB4Q9NTQ9 266 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 DDX49Q9Y6V7 483 aaKnown RBP16.1■□□□□ 0.17
USF1-209ENST00000529476 CEP290O15078 2479 aa16.1■□□□□ 0.17
USF1-209ENST00000529476 ESYT2A0FGR8 921 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 PIK3CDO00329 1044 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 ADAMTS3O15072 1205 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 GRK4P32298 578 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 FOSBP53539 338 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 OLFML2BQ68BL8 750 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 FCHSD1Q86WN1 690 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 SLAIN1Q8ND83 568 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 CCDC148Q8NFR7 591 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 PXYLP1Q8TE99 480 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 SH3TC2Q8TF17 1288 aa16.09■□□□□ 0.17
USF1-209ENST00000529476 CCDC12Q8WUD4 166 aaPredicted RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms