RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SUGT1Q9Y2Z0 365 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 B4DLN1 442 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 TBC1D8BQ0IIM8 1120 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 TMEM266Q2M3C6 531 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 ZNF662Q6ZS27 426 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 SV2BQ7L1I2 683 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 HNRNPLLQ8WVV9 542 aaKnown RBP23.75■■□□□ 1.39
VPS28-205ENST00000526204 IQCDQ96DY2 449 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 RAB34Q9BZG1 259 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 UBA5Q9GZZ9 404 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 PUF60Q9UHX1 559 aaKnown RBP23.75■■□□□ 1.39
VPS28-205ENST00000526204 ADCY7P51828 1080 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 CALCRLQ16602 461 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 DAGLAQ9Y4D2 1042 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 CDK5RAP2Q96SN8 1893 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 C6orf229H3BNL8 230 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 TRIM21P19474 475 aaKnown RBP23.74■■□□□ 1.39
VPS28-205ENST00000526204 PDIA5Q14554 519 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 POTEDQ86YR6 584 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 MSANTD4Q8NCY6 345 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 CNOT6LQ96LI5 555 aaKnown RBP23.74■■□□□ 1.39
VPS28-205ENST00000526204 UBXN6Q9BZV1 441 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 TTYH3Q9C0H2 523 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 ZSWIM4Q9H7M6 989 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 ST7Q9NRC1 585 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 LRWD1Q9UFC0 647 aa23.74■■□□□ 1.39
VPS28-205ENST00000526204 REXO2Q9Y3B8 237 aaKnown RBP23.74■■□□□ 1.39
VPS28-205ENST00000526204 PVALEFA0A1B0GWK0 134 aa23.73■■□□□ 1.39
VPS28-205ENST00000526204 ABL1P00519 1130 aa23.73■■□□□ 1.39
VPS28-205ENST00000526204 TUBBP07437 444 aa23.73■■□□□ 1.39
VPS28-205ENST00000526204 SNHG28P0DPA3 235 aa23.73■■□□□ 1.39
VPS28-205ENST00000526204 TXKP42681 527 aa23.73■■□□□ 1.39
VPS28-205ENST00000526204 ZBED6P86452 979 aa23.73■■□□□ 1.39
VPS28-205ENST00000526204 GABPAQ06546 454 aa23.73■■□□□ 1.39
VPS28-205ENST00000526204 FIGNQ5HY92 759 aa23.73■■□□□ 1.39
VPS28-205ENST00000526204 WDR59Q6PJI9 974 aa23.73■■□□□ 1.39
VPS28-205ENST00000526204 ZSCAN29Q8IWY8 852 aaPredicted RBP23.73■■□□□ 1.39
VPS28-205ENST00000526204 RAB21Q9UL25 225 aa23.73■■□□□ 1.39
VPS28-205ENST00000526204 CTAGE15A4D2H0 777 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 CTAGE8P0CG41 777 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 CYLC1P35663 651 aaPredicted RBP23.72■■□□□ 1.39
VPS28-205ENST00000526204 MTIF2P46199 727 aaKnown RBP23.72■■□□□ 1.39
VPS28-205ENST00000526204 PPP1R18Q6NYC8 613 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 CTAGE6Q86UF2 777 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 CTAGE4Q8IX94 777 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 CCDC170Q8IYT3 715 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 EHBP1Q8NDI1 1231 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 MYO6Q9UM54 1294 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 PSMD14O00487 310 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 GJD4Q96KN9 370 aaPredicted RBP23.72■■□□□ 1.39
VPS28-205ENST00000526204 ERGIC2Q96RQ1 377 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 NOC4LQ9BVI4 516 aaKnown RBP23.72■■□□□ 1.39
VPS28-205ENST00000526204 LRRC27Q9C0I9 530 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 ANKZF1Q9H8Y5 726 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 TMEM260Q9NX78 707 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 GUCA1BQ9UMX6 200 aa23.72■■□□□ 1.39
VPS28-205ENST00000526204 FRMPD2Q68DX3 1309 aaPredicted RBP23.71■■□□□ 1.39
VPS28-205ENST00000526204 IGKV6D-41A0A0C4DH26 115 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 A0A1W2PQJ5 194 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 SASH3O75995 380 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 FCER1AP12319 257 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 FKBP15Q5T1M5 1219 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 CENPPQ6IPU0 288 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 CDK5RAP3Q96JB5 506 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 FUT8Q9BYC5 575 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 COA1Q9GZY4 146 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 SWAP70Q9UH65 585 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 MYO3BQ8WXR4 1341 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 ERLIN1O75477 346 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 IPO7O95373 1038 aaKnown RBP23.71■■□□□ 1.39
VPS28-205ENST00000526204 GTF2IP78347 998 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 AMPD2Q01433 879 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 GRB10Q13322 594 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 LONRF2Q1L5Z9 754 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 UNC13DQ70J99 1090 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 MYH8P13535 1937 aa23.71■■□□□ 1.39
VPS28-205ENST00000526204 KLRG2A4D1S0 409 aaPredicted RBP23.7■■□□□ 1.38
VPS28-205ENST00000526204 FGFR1OPO95684 399 aaKnown RBP23.7■■□□□ 1.38
VPS28-205ENST00000526204 KIAA0895Q8NCT3 520 aa23.7■■□□□ 1.38
VPS28-205ENST00000526204 PNMA6FA0A0J9YX94 578 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 KRT86O43790 486 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 TTLL1O95922 423 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 HSPA1LP34931 641 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 CDK17Q00537 523 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 MIIPQ5JXC2 388 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 SP8Q8IXZ3 490 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 LARP4BQ92615 738 aaKnown RBP23.69■■□□□ 1.38
VPS28-205ENST00000526204 COA7Q96BR5 231 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 BLOC1S4Q9NUP1 217 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 MYH1P12882 1939 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 PICALMQ13492 652 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 CCDC122Q5T0U0 273 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 PPP4R3AQ6IN85 833 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 RIC8AQ9NPQ8 531 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 AGPAT5Q9NUQ2 364 aa23.69■■□□□ 1.38
VPS28-205ENST00000526204 ABCB11O95342 1321 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 RASSF10A6NK89 507 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 EIF3CLB5ME19 914 aaKnown RBP23.68■■□□□ 1.38
VPS28-205ENST00000526204 HERVK_113P62684 666 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 SMC1AQ14683 1233 aaKnown RBP23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms