RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 PLS3P13797 630 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 FOSL1P15407 271 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 CNGA1P29973 690 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 LTBRP36941 435 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 KCNAB2Q13303 367 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 NKAPLQ5M9Q1 402 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 CNNM4Q6P4Q7 775 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 NOL8Q76FK4 1167 aaKnown RBP6.4□□□□□ -1.38
CD44-220ENST00000525688 ZDHHC13Q8IUH4 622 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 KSR1Q8IVT5 923 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 AFAP1L2Q8N4X5 818 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.4□□□□□ -1.38
CD44-220ENST00000525688 ORAI3Q9BRQ5 295 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 FOXP3Q9BZS1 431 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 DDX56Q9NY93 547 aaKnown RBP6.4□□□□□ -1.38
CD44-220ENST00000525688 PIM2Q9P1W9 311 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 DUSP13Q9UII6 198 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 TMEFF2Q9UIK5 374 aaPredicted RBP6.4□□□□□ -1.38
CD44-220ENST00000525688 TRAF6Q9Y4K3 522 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 PITPNM2Q9BZ72 1349 aa6.4□□□□□ -1.39
CD44-220ENST00000525688 OPA1O60313 960 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 PAMP19021 973 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 FLT3P36888 993 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 GPR85P60893 370 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 NFKB2Q00653 900 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 KCNT2Q6UVM3 1135 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 ANKLE2Q86XL3 938 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 JAMLQ86YT9 394 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 CCDC103Q8IW40 242 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 IFNL3Q8IZI9 196 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 PLD6Q8N2A8 252 aaKnown RBP6.39□□□□□ -1.39
CD44-220ENST00000525688 STAG1Q8WVM7 1258 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 PHF20Q9BVI0 1012 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 FAM126AQ9BYI3 521 aaPredicted RBP6.39□□□□□ -1.39
CD44-220ENST00000525688 MTFR1LQ9H019 292 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 METTL14Q9HCE5 456 aaKnown RBP6.39□□□□□ -1.39
CD44-220ENST00000525688 LRRC4CQ9HCJ2 640 aa6.39□□□□□ -1.39
CD44-220ENST00000525688 BAZ1BQ9UIG0 1483 aaKnown RBP6.39□□□□□ -1.39
CD44-220ENST00000525688 SSU72P8A0A1W2PR75 194 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 ARVCFO00192 962 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 RASGRP1O95267 797 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 ESR1P03372 595 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 APPP05067 770 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 KCNA6P17658 529 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 GUCY1A3Q02108 690 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 DOC2BQ14184 412 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 ZNF460Q14592 562 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 RSPO4Q2I0M5 234 aaPredicted RBP6.38□□□□□ -1.39
CD44-220ENST00000525688 CT47A1Q5JQC4 288 aaPredicted RBP6.38□□□□□ -1.39
CD44-220ENST00000525688 LBX2Q6XYB7 198 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 DDX46Q7L014 1031 aaKnown RBP6.38□□□□□ -1.39
CD44-220ENST00000525688 DDX42Q86XP3 938 aaKnown RBP eCLIP6.38□□□□□ -1.39
CD44-220ENST00000525688 KIF18BQ86Y91 864 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 TMEM151AQ8N4L1 468 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 PRPF38AQ8NAV1 312 aaKnown RBP6.38□□□□□ -1.39
CD44-220ENST00000525688 DIO2Q92813 273 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 PTCHD1Q96NR3 888 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 PRDM16Q9HAZ2 1276 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 AP5S1Q9NUS5 200 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 CLEC1BQ9P126 229 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 ZC3H7BQ9UGR2 993 aaKnown RBP6.38□□□□□ -1.39
CD44-220ENST00000525688 MCM8Q9UJA3 840 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 PCDHA9Q9Y5H5 950 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 PCDHA11Q9Y5I1 949 aa6.38□□□□□ -1.39
CD44-220ENST00000525688 RSF1Q96T23 1441 aaPredicted RBP6.38□□□□□ -1.39
CD44-220ENST00000525688 NPHP3-ACAD11A0A0J9YXS1 232 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 TMEM82A0PJX8 343 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 PLEKHD1A6NEE1 506 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 MARCH6O60337 910 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 EYA4O95677 639 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 PMLP29590 882 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 TEKQ02763 1124 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 PCBP1Q15365 356 aaKnown RBP eCLIP6.37□□□□□ -1.39
CD44-220ENST00000525688 DHCR24Q15392 516 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 ZCCHC8Q6NZY4 707 aaKnown RBP6.37□□□□□ -1.39
CD44-220ENST00000525688 CYP2R1Q6VVX0 501 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 UBE2R2Q712K3 238 aaPredicted RBP6.37□□□□□ -1.39
CD44-220ENST00000525688 UBR7Q8N806 425 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 ASB11Q8WXH4 323 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 ATP13A1Q9HD20 1204 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 VAV3Q9UKW4 847 aa6.37□□□□□ -1.39
CD44-220ENST00000525688 LOC102724159A0A0B4J2E5 919 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 ALG1L2C9J202 215 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 WNT9AO14904 365 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 MSCO60682 206 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 TBC1D8O95759 1140 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 PROCP04070 461 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 JMJD7P0C870 316 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 CPEP16870 476 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 LTKP29376 864 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 CDKN1CP49918 316 aaPredicted RBP6.36□□□□□ -1.39
CD44-220ENST00000525688 NEK4P51957 841 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 RBM10P98175 930 aaKnown RBP6.36□□□□□ -1.39
CD44-220ENST00000525688 PRKCQQ04759 706 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 PWP2Q15269 919 aaKnown RBP6.36□□□□□ -1.39
CD44-220ENST00000525688 CFAP100Q494V2 611 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 CDCA2Q69YH5 1023 aaPredicted RBP6.36□□□□□ -1.39
CD44-220ENST00000525688 MTDHQ86UE4 582 aaKnown RBP6.36□□□□□ -1.39
CD44-220ENST00000525688 CREG2Q8IUH2 290 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 RCBTB1Q8NDN9 531 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms