RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	HCFC2	Q9Y5Z7	792 aa		3.85	□□□□□ -1.79
CD44-216	ENST00000525293	NPHP3-ACAD11	A0A0J9YXS1	232 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	ZC3H12D	A2A288	527 aa	Known RBP	3.84	□□□□□ -1.79
CD44-216	ENST00000525293		F8W031	263 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-216	ENST00000525293	RFXAP	O00287	272 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	PPP1R11	O60927	126 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-216	ENST00000525293	DDAH1	O94760	285 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	CYBB	P04839	570 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	NAT2	P11245	290 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	ZNF143	P52747	638 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-216	ENST00000525293	ZNF200	P98182	395 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-216	ENST00000525293	SCRN1	Q12765	414 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	PLEKHN1	Q494U1	663 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-216	ENST00000525293	TCERG1L	Q5VWI1	586 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	POMZP3	Q6PJE2	187 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	IGDCC3	Q8IVU1	814 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	FAM178B	Q8IXR5	827 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	TMEFF1	Q8IYR6	380 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	RXFP1	Q9HBX9	757 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-216	ENST00000525293	GPRC5C	Q9NQ84	441 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	CLEC1B	Q9P126	229 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	GULP1	Q9UBP9	304 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	PRKAG3	Q9UGI9	489 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	DBR1	Q9UK59	544 aa	Known RBP	3.84	□□□□□ -1.79
CD44-216	ENST00000525293	PCDHA5	Q9Y5H7	936 aa		3.84	□□□□□ -1.79
CD44-216	ENST00000525293	C7orf72	A4D263	438 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293		B2RBV5	119 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	IRS4	O14654	1257 aa	Predicted RBP	3.83	□□□□□ -1.8
CD44-216	ENST00000525293	SRGAP3	O43295	1099 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	BUB1B	O60566	1050 aa	Predicted RBP	3.83	□□□□□ -1.8
CD44-216	ENST00000525293	PLS3	P13797	630 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	BMP7	P18075	431 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	DNAJA1	P31689	397 aa	Known RBP	3.83	□□□□□ -1.8
CD44-216	ENST00000525293	AFF3	P51826	1226 aa	Known RBP	3.83	□□□□□ -1.8
CD44-216	ENST00000525293	PRR5	P85299	388 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	ARID5A	Q03989	594 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	VMAC	Q2NL98	169 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	SV2C	Q496J9	727 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	TNNI3K	Q59H18	835 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	GTF2IRD2B	Q6EKJ0	949 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	CNKSR3	Q6P9H4	555 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	GTF2IRD2	Q86UP8	949 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	TRIM59	Q8IWR1	403 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	3.83	□□□□□ -1.8
CD44-216	ENST00000525293	LZTR1	Q8N653	840 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	MICAL1	Q8TDZ2	1067 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	USP33	Q8TEY7	942 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	COPS5	Q92905	334 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	DACT3	Q96B18	629 aa	Predicted RBP	3.83	□□□□□ -1.8
CD44-216	ENST00000525293	MRGPRX3	Q96LB0	322 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	TINF2	Q9BSI4	451 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	ZNF408	Q9H9D4	720 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	LRP2BP	Q9P2M1	347 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	FBLN5	Q9UBX5	448 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	PLA2G2D	Q9UNK4	145 aa		3.83	□□□□□ -1.8
CD44-216	ENST00000525293	IRS2	Q9Y4H2	1338 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	TRBV23OR9-2	A0A075B6M9	112 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	SUSD5	O60279	629 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	NPHS1	O60500	1241 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	FUCA1	P04066	466 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	ITGAV	P06756	1048 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	INHBB	P09529	407 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	FGR	P09769	529 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	GLI4	P10075	376 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	FXN	Q16595	210 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	CABP7	Q86V35	215 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	FAM129C	Q86XR2	697 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	MCF2L2	Q86YR7	1114 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	TMEM151B	Q8IW70	566 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	MTA3	Q9BTC8	594 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	NKX2-4	Q9H2Z4	354 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	CYP26B1	Q9NR63	512 aa		3.82	□□□□□ -1.8
CD44-216	ENST00000525293	KRTAP9-7	A8MTY7	169 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	TBX1	O43435	398 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	GJB6	O95452	261 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	THBD	P07204	575 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	ATF2	P15336	505 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	PFKL	P17858	780 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	LIMS1	P48059	325 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	CYP4F3	Q08477	520 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	MBLAC2	Q68D91	279 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	MRM1	Q6IN84	353 aa	Known RBP	3.81	□□□□□ -1.8
CD44-216	ENST00000525293	TTLL10	Q6ZVT0	673 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	FRS2	Q8WU20	508 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	BTN2A2	Q8WVV5	523 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	PWWP2A	Q96N64	755 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	MMP19	Q99542	508 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	ZCCHC4	Q9H5U6	513 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	BCAS3	Q9H6U6	928 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	BTG4	Q9NY30	223 aa		3.81	□□□□□ -1.8
CD44-216	ENST00000525293	R3HCC1	Q9Y3T6	440 aa	Known RBP	3.81	□□□□□ -1.8
CD44-216	ENST00000525293	ADAMTS20	P59510	1910 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293		E9PSI1	815 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	TRIM13	O60858	407 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	NTRK1	P04629	796 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	SNRPB2	P08579	225 aa	Known RBP	3.8	□□□□□ -1.8
CD44-216	ENST00000525293	NCAM1	P13591	858 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	FBLN1	P23142	703 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	IGFBP6	P24592	240 aa	Predicted RBP	3.8	□□□□□ -1.8

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