RNA–Protein interactions for RNA: ENST00000525257.1

USP47-205, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 4

Gene USP47, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-205ENST00000525257 ZBTB47Q9UFB7 747 aaPredicted RBP28.26■■■□□ 2.11
USP47-205ENST00000525257 YBX2Q9Y2T7 364 aaKnown RBP28.26■■■□□ 2.11
USP47-205ENST00000525257 MUC3AQ02505 3323 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 CHD7Q9P2D1 2997 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 PTPDC1A2A3K4 754 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 FGRP09769 529 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 ADGRE1Q14246 886 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 ALX1Q15699 326 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 DUSP28Q4G0W2 176 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 ANKRD45Q5TZF3 282 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 BTNL9Q6UXG8 535 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 SCLYQ96I15 445 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 TMEM47Q9BQJ4 181 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 WDR11Q9BZH6 1224 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 ALDH8A1Q9H2A2 487 aaPredicted RBP28.25■■■□□ 2.11
USP47-205ENST00000525257 HELLSQ9NRZ9 838 aa28.25■■■□□ 2.11
USP47-205ENST00000525257 TOP1P11387 765 aaKnown RBP28.24■■■□□ 2.11
USP47-205ENST00000525257 AKNAD1Q5T1N1 836 aa28.24■■■□□ 2.11
USP47-205ENST00000525257 SLC30A10Q6XR72 485 aa28.24■■■□□ 2.11
USP47-205ENST00000525257 FAM227BQ96M60 508 aa28.24■■■□□ 2.11
USP47-205ENST00000525257 SLC28A3Q9HAS3 691 aa28.24■■■□□ 2.11
USP47-205ENST00000525257 FGAP02671 866 aa28.23■■■□□ 2.11
USP47-205ENST00000525257 IGFBP4P22692 258 aa28.23■■■□□ 2.11
USP47-205ENST00000525257 CCDC85BQ15834 202 aaPredicted RBP28.23■■■□□ 2.11
USP47-205ENST00000525257 TRMT13Q9NUP7 481 aaKnown RBP28.23■■■□□ 2.11
USP47-205ENST00000525257 POLR3EQ9NVU0 708 aa28.23■■■□□ 2.11
USP47-205ENST00000525257 A0A0D9SFI3 127 aa28.22■■■□□ 2.11
USP47-205ENST00000525257 MYL3P08590 195 aa28.22■■■□□ 2.11
USP47-205ENST00000525257 CALML3P27482 149 aa28.22■■■□□ 2.11
USP47-205ENST00000525257 RABGGTBP53611 331 aa28.22■■■□□ 2.11
USP47-205ENST00000525257 RPUSD2Q8IZ73 545 aaKnown RBP28.22■■■□□ 2.11
USP47-205ENST00000525257 SLC4A7Q9Y6M7 1214 aa28.22■■■□□ 2.11
USP47-205ENST00000525257 ZBBXA8MT70 800 aa28.21■■■□□ 2.11
USP47-205ENST00000525257 CYP2C9P11712 490 aa28.21■■■□□ 2.11
USP47-205ENST00000525257 OR6J1Q8NGC5 347 aa28.21■■■□□ 2.11
USP47-205ENST00000525257 THEGQ9P2T0 379 aa28.21■■■□□ 2.11
USP47-205ENST00000525257 TNKSO95271 1327 aa28.2■■■□□ 2.11
USP47-205ENST00000525257 PDHBP11177 359 aa28.2■■■□□ 2.1
USP47-205ENST00000525257 CPT1AP50416 773 aa28.2■■■□□ 2.1
USP47-205ENST00000525257 PDE1AP54750 535 aa28.2■■■□□ 2.1
USP47-205ENST00000525257 HAND2P61296 217 aa28.2■■■□□ 2.1
USP47-205ENST00000525257 PURAQ00577 322 aaKnown RBP28.2■■■□□ 2.1
USP47-205ENST00000525257 CLEC4DQ8WXI8 215 aa28.2■■■□□ 2.1
USP47-205ENST00000525257 VWCEQ96DN2 955 aa28.2■■■□□ 2.1
USP47-205ENST00000525257 TCP11L1Q9NUJ3 509 aa28.2■■■□□ 2.1
USP47-205ENST00000525257 LOC102724159A0A0B4J2E5 919 aa28.19■■■□□ 2.1
USP47-205ENST00000525257 RBM47A0AV96 593 aaKnown RBP28.19■■■□□ 2.1
USP47-205ENST00000525257 MYOGP15173 224 aa28.19■■■□□ 2.1
USP47-205ENST00000525257 PWP2Q15269 919 aaKnown RBP28.19■■■□□ 2.1
USP47-205ENST00000525257 MCMDC2Q4G0Z9 681 aa28.19■■■□□ 2.1
USP47-205ENST00000525257 RNF207Q6ZRF8 634 aa28.19■■■□□ 2.1
USP47-205ENST00000525257 ATXN2LQ8WWM7 1075 aaKnown RBP28.19■■■□□ 2.1
USP47-205ENST00000525257 TNFRSF10AO00220 468 aa28.18■■■□□ 2.1
USP47-205ENST00000525257 SUPT20HL2P0C7V6 817 aa28.18■■■□□ 2.1
USP47-205ENST00000525257 HSPD1P10809 573 aaKnown RBP28.18■■■□□ 2.1
USP47-205ENST00000525257 PDE4DQ08499 809 aa28.18■■■□□ 2.1
USP47-205ENST00000525257 PPP2R2DQ66LE6 453 aa28.18■■■□□ 2.1
USP47-205ENST00000525257 ZNF589Q86UQ0 364 aaPredicted RBP28.18■■■□□ 2.1
USP47-205ENST00000525257 PPP1R13LQ8WUF5 828 aa28.18■■■□□ 2.1
USP47-205ENST00000525257 MTG1Q9BT17 334 aaPredicted RBP28.18■■■□□ 2.1
USP47-205ENST00000525257 GPHNQ9NQX3 736 aaPredicted RBP28.18■■■□□ 2.1
USP47-205ENST00000525257 SCN5AQ14524 2016 aa28.18■■■□□ 2.1
USP47-205ENST00000525257 ZNF543Q08ER8 600 aa28.17■■■□□ 2.1
USP47-205ENST00000525257 NMIQ13287 307 aaPredicted RBP28.17■■■□□ 2.1
USP47-205ENST00000525257 PPP2R5BQ15173 497 aa28.17■■■□□ 2.1
USP47-205ENST00000525257 FAM47CQ5HY64 1035 aa28.17■■■□□ 2.1
USP47-205ENST00000525257 DEFB128Q7Z7B8 93 aa28.17■■■□□ 2.1
USP47-205ENST00000525257 ZMYM6O95789 1325 aa28.17■■■□□ 2.1
USP47-205ENST00000525257 ATP2A2P16615 1042 aaKnown RBP28.16■■■□□ 2.1
USP47-205ENST00000525257 RPS6P62753 249 aaKnown RBP28.16■■■□□ 2.1
USP47-205ENST00000525257 TTLL4Q14679 1199 aa28.16■■■□□ 2.1
USP47-205ENST00000525257 ASB2Q96Q27 587 aa28.16■■■□□ 2.1
USP47-205ENST00000525257 PCDHA11Q9Y5I1 949 aa28.16■■■□□ 2.1
USP47-205ENST00000525257 SCN10AQ9Y5Y9 1956 aa28.16■■■□□ 2.1
USP47-205ENST00000525257 RRP1P56182 461 aaKnown RBP28.15■■■□□ 2.1
USP47-205ENST00000525257 NBPF20Q3BBV1 942 aa28.15■■■□□ 2.1
USP47-205ENST00000525257 COPS5Q92905 334 aa28.15■■■□□ 2.1
USP47-205ENST00000525257 MPHOSPH6Q99547 160 aaKnown RBP28.15■■■□□ 2.1
USP47-205ENST00000525257 PNMA2Q9UL42 364 aa28.15■■■□□ 2.1
USP47-205ENST00000525257 WDR19Q8NEZ3 1342 aa28.15■■■□□ 2.1
USP47-205ENST00000525257 RAD50Q92878 1312 aa28.15■■■□□ 2.1
USP47-205ENST00000525257 PFKMP08237 780 aa28.14■■■□□ 2.1
USP47-205ENST00000525257 EDNRBP24530 442 aa28.14■■■□□ 2.1
USP47-205ENST00000525257 BRDTQ58F21 947 aaPredicted RBP28.14■■■□□ 2.1
USP47-205ENST00000525257 MFSD6Q6ZSS7 791 aa28.14■■■□□ 2.1
USP47-205ENST00000525257 TBC1D10CQ8IV04 446 aa28.14■■■□□ 2.1
USP47-205ENST00000525257 SCFD2Q8WU76 684 aa28.14■■■□□ 2.1
USP47-205ENST00000525257 CRBNQ96SW2 442 aa28.14■■■□□ 2.1
USP47-205ENST00000525257 REV3LO60673 3130 aa28.14■■■□□ 2.1
USP47-205ENST00000525257 CCDC171Q6TFL3 1326 aa28.14■■■□□ 2.09
USP47-205ENST00000525257 NKRFO15226 690 aaKnown RBP eCLIP28.13■■■□□ 2.09
USP47-205ENST00000525257 SNHG28P0DPA3 235 aa28.13■■■□□ 2.09
USP47-205ENST00000525257 MRPS5P82675 430 aaKnown RBP28.13■■■□□ 2.09
USP47-205ENST00000525257 USH1GQ495M9 461 aa28.13■■■□□ 2.09
USP47-205ENST00000525257 MICALL1Q8N3F8 863 aa28.13■■■□□ 2.09
USP47-205ENST00000525257 TTC14Q96N46 770 aa28.13■■■□□ 2.09
USP47-205ENST00000525257 TANC1Q9C0D5 1861 aa28.12■■■□□ 2.09
USP47-205ENST00000525257 TRANK1O15050 2925 aa28.12■■■□□ 2.09
USP47-205ENST00000525257 TRIM6-TRIM34B2RNG4 842 aa28.12■■■□□ 2.09
USP47-205ENST00000525257 GOLGA8HP0CJ92 632 aa28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms