RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 MEIS1O00470 390 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 CYTH3O43739 400 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 BMP6P22004 513 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 DNM2P50570 870 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 CDC37Q16543 378 aaPredicted RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 HAUS3Q68CZ6 603 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 ZNF772Q68DY9 489 aaPredicted RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 CC2D2BQ6DHV5 1058 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 SUPT20HQ8NEM7 779 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 GOLGA1Q92805 767 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 CCDC102AQ96A19 550 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 NAA15Q9BXJ9 866 aaKnown RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 DNM3Q9UQ16 869 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 GJA3Q9Y6H8 435 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 FAM13AO94988 1023 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 PPP1R2P41236 205 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 NT5C2P49902 561 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 RGS22Q8NE09 1264 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 POLD4Q9HCU8 107 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 POLRMTO00411 1230 aaKnown RBP11.31□□□□□ -0.6
MCF2-209ENST00000520602 ZBTB5O15062 677 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 FUT2Q10981 343 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 MYOCDQ8IZQ8 938 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 NAP1L4Q99733 375 aaKnown RBP11.31□□□□□ -0.6
MCF2-209ENST00000520602 ARFGAP3Q9NP61 516 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 PANK4Q9NVE7 773 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 SRGNP10124 158 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 FCER1AP12319 257 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 NOP2P46087 812 aaKnown RBP11.31□□□□□ -0.6
MCF2-209ENST00000520602 TRAF1Q13077 416 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 PABPC4Q13310 644 aaKnown RBP eCLIP11.31□□□□□ -0.6
MCF2-209ENST00000520602 RRAGAQ7L523 313 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 TPH2Q8IWU9 490 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 GTPBP4Q9BZE4 634 aaKnown RBP11.31□□□□□ -0.6
MCF2-209ENST00000520602 CUEDC2Q9H467 287 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 KCNQ5Q9NR82 932 aa11.31□□□□□ -0.6
MCF2-209ENST00000520602 PDS5AQ29RF7 1337 aaKnown RBP11.31□□□□□ -0.6
MCF2-209ENST00000520602 FAM170AA1A519 330 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 ERICH4A6NGS2 130 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 IL1R1P14778 569 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 FAM26FQ5R3K3 315 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 NIM1KQ8IY84 436 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 KRT222Q8N1A0 295 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 DHTKD1Q96HY7 919 aaPredicted RBP11.3□□□□□ -0.6
MCF2-209ENST00000520602 NT5C3AQ9H0P0 336 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 ACBD3Q9H3P7 528 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 EPN1Q9Y6I3 576 aaPredicted RBP11.3□□□□□ -0.6
MCF2-209ENST00000520602 F5H6K3 240 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 BMP3P12645 472 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 CCNE1P24864 410 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 KLRC3Q07444 240 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 NCBP1Q09161 790 aaKnown RBP11.3□□□□□ -0.6
MCF2-209ENST00000520602 SKIDA1Q1XH10 827 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 QRICH1Q2TAL8 776 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 CCDC51Q96ER9 411 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 NAPGQ99747 312 aaPredicted RBP11.3□□□□□ -0.6
MCF2-209ENST00000520602 IRX2Q9BZI1 471 aaPredicted RBP11.3□□□□□ -0.6
MCF2-209ENST00000520602 ZMYND12Q9H0C1 365 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 RGL2O15211 777 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 SP4Q02446 784 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 EN1Q05925 392 aaPredicted RBP11.3□□□□□ -0.6
MCF2-209ENST00000520602 ZNF543Q08ER8 600 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 RAPGEF1Q13905 1077 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 CT47A1Q5JQC4 288 aaPredicted RBP11.3□□□□□ -0.6
MCF2-209ENST00000520602 TXLNBQ8N3L3 684 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 PSMB7Q99436 277 aa11.3□□□□□ -0.6
MCF2-209ENST00000520602 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.3□□□□□ -0.6
MCF2-209ENST00000520602 CETN3O15182 167 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 USP8P40818 1118 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 CHMP4BP1P59074 171 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 CEP112Q8N8E3 955 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 JAKMIP2Q96AA8 810 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 RUFY1Q96T51 708 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 DDX4Q9NQI0 724 aaKnown RBP11.29□□□□□ -0.6
MCF2-209ENST00000520602 SIPA1L3O60292 1781 aaPredicted RBP11.29□□□□□ -0.6
MCF2-209ENST00000520602 PPP1R3GB7ZBB8 358 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 MFAP3LO75121 409 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 EEF1GP26641 437 aaKnown RBP11.29□□□□□ -0.6
MCF2-209ENST00000520602 EHBP1Q8NDI1 1231 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 ALS2CR12Q96Q35 445 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 NUP58Q9BVL2 599 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 ANO3Q9BYT9 981 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 PAFAH1B1P43034 410 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 NR1I3Q14994 352 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 DDX12PQ92771 950 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 MAGEF1Q9HAY2 307 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 SCAF8Q9UPN6 1271 aaKnown RBP11.29□□□□□ -0.6
MCF2-209ENST00000520602 A0A1B0GTH6 734 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 hCG_1984214I3L0E3 225 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 TACC1O75410 805 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 GCNT3O95395 438 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 MDM2Q00987 491 aaPredicted RBP11.29□□□□□ -0.6
MCF2-209ENST00000520602 TMEM179Q6ZVK1 233 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 SLC35F6Q8N357 371 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 ZNF713Q8N859 430 aaPredicted RBP11.29□□□□□ -0.6
MCF2-209ENST00000520602 TC2NQ8N9U0 490 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 TAF4BQ92750 862 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 CCSER1Q9C0I3 900 aa11.29□□□□□ -0.6
MCF2-209ENST00000520602 MRPL44Q9H9J2 332 aaKnown RBP11.29□□□□□ -0.6
MCF2-209ENST00000520602 JMJD4Q9H9V9 463 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms