RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 XRN1Q8IZH2 1706 aaKnown RBP7.32□□□□□ -1.24
NUP54-218ENST00000515460 NPHP3Q7Z494 1330 aa7.31□□□□□ -1.24
NUP54-218ENST00000515460 ADGRF5Q8IZF2 1346 aa7.31□□□□□ -1.24
NUP54-218ENST00000515460 PLCG1P19174 1290 aa7.31□□□□□ -1.24
NUP54-218ENST00000515460 TRHRP34981 398 aaPredicted RBP7.31□□□□□ -1.24
NUP54-218ENST00000515460 FAM13CQ8NE31 585 aa7.31□□□□□ -1.24
NUP54-218ENST00000515460 ZSCAN18Q8TBC5 510 aaPredicted RBP7.31□□□□□ -1.24
NUP54-218ENST00000515460 GIPC2Q8TF65 315 aa7.31□□□□□ -1.24
NUP54-218ENST00000515460 TMEM74Q96NL1 305 aa7.31□□□□□ -1.24
NUP54-218ENST00000515460 TULP4Q9NRJ4 1543 aa7.31□□□□□ -1.24
NUP54-218ENST00000515460 RRBP1Q9P2E9 1410 aaKnown RBP7.3□□□□□ -1.24
NUP54-218ENST00000515460 CILPO75339 1184 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 PF4P02776 101 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 TMEM253P0C7T8 217 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 POLD1P28340 1107 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 SOX10P56693 466 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 RGL3Q3MIN7 710 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 TMCO4Q5TGY1 634 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 TMEM132EQ6IEE7 984 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 BNC2Q6ZN30 1099 aaPredicted RBP7.3□□□□□ -1.24
NUP54-218ENST00000515460 PPP1R13LQ8WUF5 828 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 GATAD2BQ8WXI9 593 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 CCDC136Q96JN2 1154 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 EPB41L4BQ9H329 900 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 TRIT1Q9H3H1 467 aaKnown RBP7.3□□□□□ -1.24
NUP54-218ENST00000515460 GPATCH2Q9NW75 528 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 STK26Q9P289 416 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 DUSP13Q9UII6 198 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 CLTCL1P53675 1640 aa7.3□□□□□ -1.24
NUP54-218ENST00000515460 PRAG1Q86YV5 1406 aa7.29□□□□□ -1.24
NUP54-218ENST00000515460 LRRN2O75325 713 aa7.29□□□□□ -1.24
NUP54-218ENST00000515460 KRT1P04264 644 aa7.29□□□□□ -1.24
NUP54-218ENST00000515460 YARSP54577 528 aaKnown RBP7.29□□□□□ -1.24
NUP54-218ENST00000515460 EGR3Q06889 387 aa7.29□□□□□ -1.24
NUP54-218ENST00000515460 TXNRD1Q16881 649 aa7.29□□□□□ -1.24
NUP54-218ENST00000515460 KRTAP19-4Q3LI73 84 aa7.29□□□□□ -1.24
NUP54-218ENST00000515460 SNAP47Q5SQN1 464 aa7.29□□□□□ -1.24
NUP54-218ENST00000515460 PMFBP1Q8TBY8 1022 aa7.29□□□□□ -1.24
NUP54-218ENST00000515460 RHOVQ96L33 236 aa7.29□□□□□ -1.24
NUP54-218ENST00000515460 USP35Q9P2H5 1018 aa7.29□□□□□ -1.24
NUP54-218ENST00000515460 SPATA31A3Q5VYP0 1347 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 FANCIQ9NVI1 1328 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 HFM1A2PYH4 1435 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 NPIPB6E9PJ23 425 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 ZSCAN22P10073 491 aaPredicted RBP7.28□□□□□ -1.24
NUP54-218ENST00000515460 TNNI2P48788 182 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 GAB4Q2WGN9 574 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 LCNL1Q6ZST4 164 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 C1QL4Q86Z23 238 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 DTWD2Q8NBA8 298 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 CYB5D2Q8WUJ1 264 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 KCNH3Q9ULD8 1083 aa7.28□□□□□ -1.24
NUP54-218ENST00000515460 FAM221AA4D161 298 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 F13A1P00488 732 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 HPXP02790 462 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 ATG14Q6ZNE5 492 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 KRT28Q7Z3Y7 464 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 SMC1BQ8NDV3 1235 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 KCNN1Q92952 543 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 MPHOSPH9Q99550 1183 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 MCOLN1Q9GZU1 580 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 RNF32Q9H0A6 362 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 SUPT16HQ9Y5B9 1047 aaKnown RBP7.27□□□□□ -1.25
NUP54-218ENST00000515460 PLEKHH1Q9ULM0 1364 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 SPATA31A1Q5TZJ5 1347 aa7.27□□□□□ -1.25
NUP54-218ENST00000515460 LRPPRCP42704 1394 aaKnown RBP7.26□□□□□ -1.25
NUP54-218ENST00000515460 ABCC11Q96J66 1382 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 MINDY4BA8MYZ0 360 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 FAM160A1Q05DH4 1040 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 MPP2Q14168 576 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 TMEM201Q5SNT2 666 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 TSPYL5Q86VY4 417 aaPredicted RBP7.26□□□□□ -1.25
NUP54-218ENST00000515460 GOLM1Q8NBJ4 401 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 GCC1Q96CN9 775 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 YTHDC1Q96MU7 727 aaKnown RBP7.26□□□□□ -1.25
NUP54-218ENST00000515460 GPR62Q9BZJ7 368 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 KLHL3Q9UH77 587 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 PCDHA11Q9Y5I1 949 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 TECPR2O15040 1411 aa7.26□□□□□ -1.25
NUP54-218ENST00000515460 RGPD3A6NKT7 1758 aaPredicted RBP7.25□□□□□ -1.25
NUP54-218ENST00000515460 RGPD4Q7Z3J3 1758 aa7.25□□□□□ -1.25
NUP54-218ENST00000515460 ETV2O00321 342 aaPredicted RBP7.25□□□□□ -1.25
NUP54-218ENST00000515460 SRFP11831 508 aa7.25□□□□□ -1.25
NUP54-218ENST00000515460 ZNF827Q17R98 1081 aa7.25□□□□□ -1.25
NUP54-218ENST00000515460 HS2ST1Q7LGA3 356 aa7.25□□□□□ -1.25
NUP54-218ENST00000515460 ERMP1Q7Z2K6 904 aa7.25□□□□□ -1.25
NUP54-218ENST00000515460 BAHD1Q8TBE0 780 aaPredicted RBP7.25□□□□□ -1.25
NUP54-218ENST00000515460 C14orf93Q9H972 538 aaKnown RBP7.25□□□□□ -1.25
NUP54-218ENST00000515460 KBTBD4Q9NVX7 518 aa7.25□□□□□ -1.25
NUP54-218ENST00000515460 SPATA31E1Q6ZUB1 1445 aa7.25□□□□□ -1.25
NUP54-218ENST00000515460 TCAF2A6NFQ2 919 aa7.24□□□□□ -1.25
NUP54-218ENST00000515460 CHURC1-FNTBB4DL54 471 aa7.24□□□□□ -1.25
NUP54-218ENST00000515460 ZGLP1P0C6A0 271 aa7.24□□□□□ -1.25
NUP54-218ENST00000515460 MRPL58Q14197 206 aaKnown RBP7.24□□□□□ -1.25
NUP54-218ENST00000515460 KCNA10Q16322 511 aa7.24□□□□□ -1.25
NUP54-218ENST00000515460 CWF19L2Q2TBE0 894 aaKnown RBP7.24□□□□□ -1.25
NUP54-218ENST00000515460 REC114Q7Z4M0 266 aa7.24□□□□□ -1.25
NUP54-218ENST00000515460 SYTL4Q96C24 671 aaPredicted RBP7.24□□□□□ -1.25
NUP54-218ENST00000515460 REV1Q9UBZ9 1251 aa7.24□□□□□ -1.25
NUP54-218ENST00000515460 PRR36Q9H6K5 1346 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms