RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NLRX1Q86UT6 975 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 EPC1Q9H2F5 836 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 CUEDC2Q9H467 287 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 SERPINB13Q9UIV8 391 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 RWDD2AQ9UIY3 292 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 STK24Q9Y6E0 443 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 K7ENM7 598 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 NMT2O60551 498 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 GAS8O95995 478 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 ALDH1B1P30837 517 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 EIF4A3P38919 411 aaKnown RBP13.92□□□□□ -0.18
USP53-209ENST00000514665 CCT5P48643 541 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 DMTNQ08495 405 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 MTMR3Q13615 1198 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 CUL4BQ13620 913 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 MAN2A1Q16706 1144 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 KMT5BQ4FZB7 885 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 AK8Q96MA6 479 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 TSPOAP1O95153 1857 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 FTCDO95954 541 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 DLATP10515 647 aaKnown RBP13.92□□□□□ -0.18
USP53-209ENST00000514665 GYS2P54840 703 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 TOGARAM2Q6ZUX3 1019 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 AMNQ9BXJ7 453 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 TRIM7Q9C029 511 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 METTL14Q9HCE5 456 aaKnown RBP13.92□□□□□ -0.18
USP53-209ENST00000514665 LEMD3Q9Y2U8 911 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 FAM169AQ9Y6X4 670 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 ALKQ9UM73 1620 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 ABCC12Q96J65 1359 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 ABCA6Q8N139 1617 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 DCAF8L1A6NGE4 600 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 CLIC2O15247 247 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 ARHGAP25P42331 645 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 ZBED6P86452 979 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 FAM102BQ5T8I3 360 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 SLFN12Q8IYM2 578 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 EPB41L5Q9HCM4 733 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 CLEC11AQ9Y240 323 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 TULP4Q9NRJ4 1543 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 CRB1P82279 1406 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 KIF28PB7ZC32 967 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 LAD1O00515 517 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 KRT19P08727 400 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 UBE2SQ16763 222 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 XKR9Q5GH70 373 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 BAIAP2L1Q9UHR4 511 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 FAM184BQ9ULE4 1060 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 RABGAP1Q9Y3P9 1069 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 TRIM49BA6NDI0 452 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 NOP56O00567 594 aaKnown RBP13.91□□□□□ -0.18
USP53-209ENST00000514665 MFAP3LO75121 409 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 ZBED4O75132 1171 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 C2orf54Q08AI8 447 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 CAPN12Q6ZSI9 719 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 TMTC3Q6ZXV5 915 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 SREK1Q8WXA9 508 aaKnown RBP13.91□□□□□ -0.18
USP53-209ENST00000514665 MAGEF1Q9HAY2 307 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 LY9Q9HBG7 655 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 STIM2Q9P246 746 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 RPAP1Q9BWH6 1393 aaPredicted RBP13.91□□□□□ -0.18
USP53-209ENST00000514665 HEXIM1O94992 359 aaKnown RBP13.91□□□□□ -0.18
USP53-209ENST00000514665 MOCS3O95396 460 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 GPATCH4Q5T3I0 446 aaKnown RBP13.91□□□□□ -0.18
USP53-209ENST00000514665 TAOK1Q7L7X3 1001 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 SLC44A5Q8NCS7 719 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP53-209ENST00000514665 CAPN7Q9Y6W3 813 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 ATP10DQ9P241 1426 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 SPHKAPQ2M3C7 1700 aa13.91□□□□□ -0.18
USP53-209ENST00000514665 DKC1O60832 514 aaKnown RBP eCLIP13.9□□□□□ -0.18
USP53-209ENST00000514665 PRR29P0C7W0 189 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 POLR2MP0CAP2 368 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 SHC4Q6S5L8 630 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 ENAHQ8N8S7 591 aaPredicted RBP13.9□□□□□ -0.18
USP53-209ENST00000514665 RETREG2Q8NC44 543 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 PANX2Q96RD6 677 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 TEX33O43247 280 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 LRRN2O75325 713 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 TBC1D8O95759 1140 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 FERP16591 822 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 FOXO4P98177 505 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 ABCB5Q2M3G0 1257 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 TCP11X2Q5H9J9 407 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 ATG9AQ7Z3C6 839 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 STAG1Q8WVM7 1258 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 NHEJ1Q9H9Q4 299 aaPredicted RBP13.9□□□□□ -0.18
USP53-209ENST00000514665 DISC1Q9NRI5 854 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 UBN2Q6ZU65 1347 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 BUB1BO60566 1050 aaPredicted RBP13.9□□□□□ -0.18
USP53-209ENST00000514665 RNF40O75150 1001 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 GDF11O95390 407 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 GRM1Q13255 1194 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 ASPRV1Q53RT3 343 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 ARMCX5Q6P1M9 558 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 FAM133AQ8N9E0 248 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 ABCB6Q9NP58 842 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 TMOD4Q9NZQ9 345 aa13.9□□□□□ -0.18
USP53-209ENST00000514665 TTLL1O95922 423 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 SLC7A5Q01650 507 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms