RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 LBX2Q6XYB7 198 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 LPAR1Q92633 364 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 SLC26A6Q9BXS9 759 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 NYAP2Q9P242 653 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 RFX7Q2KHR2 1363 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 CT47A1Q5JQC4 288 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 GNASQ5JWF2 1037 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 JAKMIP3Q5VZ66 844 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 STAG1Q8WVM7 1258 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 SAGE1Q9NXZ1 904 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 A0A1B0GUL6 1792 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 ADCYAP1R1P41586 468 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 GIMAP6Q6P9H5 292 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 GOLGA6L1Q8N7Z2 621 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 MAP4K1Q92918 833 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 PPP1R16BQ96T49 567 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 CNNM2Q9H8M5 875 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 GRPEL1Q9HAV7 217 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 MAPK4P31152 587 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 ANTXR2P58335 489 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 MAP2K5Q13163 448 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 ZRSR1Q15695 479 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 RNF207Q6ZRF8 634 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 FBXO11Q86XK2 927 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 AIFM3Q96NN9 605 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 PPP1R12CQ9BZL4 782 aa9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.03□□□□□ -0.96
LIMCH1-219ENST00000514096 ZBTB43O43298 467 aa9.02□□□□□ -0.96
LIMCH1-219ENST00000514096 FARP2O94887 1054 aaPredicted RBP9.02□□□□□ -0.96
LIMCH1-219ENST00000514096 RPS6P62753 249 aaKnown RBP9.02□□□□□ -0.96
LIMCH1-219ENST00000514096 SMARCC2Q8TAQ2 1214 aa9.02□□□□□ -0.96
LIMCH1-219ENST00000514096 A1CFQ9NQ94 594 aaKnown RBP9.02□□□□□ -0.96
LIMCH1-219ENST00000514096 ZSWIM8A7E2V4 1837 aa9.02□□□□□ -0.96
LIMCH1-219ENST00000514096 GOLGA6L6A8MZA4 724 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 METAP2P50579 478 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 ARHGEF16Q5VV41 709 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 REM2Q8IYK8 340 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 BMP2KQ9NSY1 1161 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 FEM1BQ9UK73 627 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 SNX14Q9Y5W7 946 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 MARCH6O60337 910 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 PTPREP23469 700 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 ZNF76P36508 570 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 NAPAP54920 295 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 MAP3K10Q02779 954 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 ZNF543Q08ER8 600 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 LRCH2Q5VUJ6 765 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 TBC1D2Q9BYX2 928 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 ACAD9Q9H845 621 aa9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 ZNF214Q9UL59 606 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-219ENST00000514096 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 EVI5O60447 810 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 OFD1O75665 1012 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 CNMDO75829 334 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 PDE4DQ08499 809 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 CXCL17Q6UXB2 119 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 C10orf67Q8IYJ2 551 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 GJA10Q969M2 543 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 ZNF668Q96K58 619 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 TAAR1Q96RJ0 339 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 PDRG1Q9NUG6 133 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 CYP46A1Q9Y6A2 500 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 TTC28Q96AY4 2481 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 HMGCRP04035 888 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 HOXA7P31268 230 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 NAP1L1P55209 391 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 SATB1Q01826 763 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 RTN1Q16799 776 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 PDCL2Q8N4E4 241 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 RMDN3Q96TC7 470 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 ALG1Q9BT22 464 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 ECM29Q5VYK3 1845 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 UNC80Q8N2C7 3258 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 DYNC1I1O14576 645 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 MARK3P27448 753 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 SETQ01105 290 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 GNL2Q13823 731 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 SH3D19Q5HYK7 790 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 MCTP1Q6DN14 999 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 FAM117BQ6P1L5 589 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 SH2D3AQ9BRG2 576 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 VPS54Q9P1Q0 977 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 CALCOCO1Q9P1Z2 691 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 NOD1Q9Y239 953 aa9.01□□□□□ -0.97
LIMCH1-219ENST00000514096 MYL3P08590 195 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 PSMC6P62333 389 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 IGBP1P78318 339 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 CCDC144BQ3MJ40 725 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 ZSCAN30Q86W11 494 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 XPNPEP3Q9NQH7 507 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 GEMIN8Q9NWZ8 242 aaKnown RBP9□□□□□ -0.97
LIMCH1-219ENST00000514096 SLC5A4Q9NY91 659 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 TCEAL9Q9UHQ7 104 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 H0YHG0 523 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 ORC4O43929 436 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 CCDC172P0C7W6 258 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 SARNPP82979 210 aaKnown RBP9□□□□□ -0.97
LIMCH1-219ENST00000514096 CHRDL2Q6WN34 429 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 JMJD4Q9H9V9 463 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms