RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 COBLO75128 1261 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 CXCR5P32302 372 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 CRKLP46109 303 aaKnown RBP12.34□□□□□ -0.43
TCOF1-211ENST00000513346 ZBED6P86452 979 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 RASSF7Q02833 373 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 TCP10Q12799 353 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 TGFBRAP1Q8WUH2 860 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 IRX2Q9BZI1 471 aaPredicted RBP12.34□□□□□ -0.43
TCOF1-211ENST00000513346 PPIP5K2O43314 1243 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 SRGAP2O75044 1071 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 SASH1O94885 1247 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 GYG1P46976 350 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 SP4Q02446 784 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 TSC22D3Q99576 134 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 LARSQ9P2J5 1176 aaKnown RBP12.34□□□□□ -0.43
TCOF1-211ENST00000513346 LRWD1Q9UFC0 647 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 ZBTB21Q9ULJ3 1066 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 NOVA2Q9UNW9 492 aaKnown RBP12.34□□□□□ -0.43
TCOF1-211ENST00000513346 BACH1O14867 736 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 EIF3HO15372 352 aaKnown RBP eCLIP12.33□□□□□ -0.445e-6■■■□□ 14.9
TCOF1-211ENST00000513346 SLC1A4P43007 532 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 IFNAR2P48551 515 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 BCAMP50895 628 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 DRP2Q13474 957 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 ZYXQ15942 572 aaKnown RBP12.33□□□□□ -0.44
TCOF1-211ENST00000513346 FAM133BQ5BKY9 247 aaKnown RBP12.33□□□□□ -0.44
TCOF1-211ENST00000513346 HHATQ5VTY9 493 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 TBC1D1Q86TI0 1168 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-211ENST00000513346 NLRP14Q86W24 1093 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 GSPT2Q8IYD1 628 aaKnown RBP12.33□□□□□ -0.44
TCOF1-211ENST00000513346 VTI1AQ96AJ9 217 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 FAM212AQ96EL1 285 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 NAP1L4Q99733 375 aaKnown RBP12.33□□□□□ -0.44
TCOF1-211ENST00000513346 ABHD10Q9NUJ1 306 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 RWDD2AQ9UIY3 292 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 NFU1Q9UMS0 254 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 SPOPO43791 374 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 PHKA1P46020 1223 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 PTPN12Q05209 780 aaKnown RBP12.33□□□□□ -0.44
TCOF1-211ENST00000513346 AKNAD1Q5T1N1 836 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 SH3GL3Q99963 347 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 NHEJ1Q9H9Q4 299 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-211ENST00000513346 ASIC3Q9UHC3 531 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 LRRC7Q96NW7 1537 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 hCG_1642624A0A1W2PR95 340 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 KRT31Q15323 416 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 TMC4Q7Z404 712 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 CCDC105Q8IYK2 499 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 P3H4Q92791 437 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 SPDL1Q96EA4 605 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 FAM114A2Q9NRY5 505 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 GMNCA6NCL1 334 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 PDE8BO95263 885 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 IRAK1P51617 712 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 TFAP4Q01664 338 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 DLGAP5Q15398 846 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 LRRC23Q53EV4 343 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-211ENST00000513346 ZNF654Q8IZM8 581 aa12.33□□□□□ -0.44
TCOF1-211ENST00000513346 CYP27A1Q02318 531 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 MTF1Q14872 753 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 APOA5Q6Q788 366 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 LRRC31Q6UY01 552 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 CABP7Q86V35 215 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 VCX3AQ9NNX9 186 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 MOCS3O95396 460 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 SATB1Q01826 763 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 USP17L12C9JPN9 530 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 USP17L21D6R901 530 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 N4BP1O75113 896 aaKnown RBP12.32□□□□□ -0.44
TCOF1-211ENST00000513346 ARHGAP27Q6ZUM4 889 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 FANCBQ8NB91 859 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 HEG1Q9ULI3 1381 aa12.32□□□□□ -0.44
TCOF1-211ENST00000513346 ANKRD20A3Q5VUR7 823 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 CNOT6LQ96LI5 555 aaKnown RBP12.31□□□□□ -0.44
TCOF1-211ENST00000513346 TMOD4Q9NZQ9 345 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 SRPRBQ9Y5M8 271 aaKnown RBP12.31□□□□□ -0.44
TCOF1-211ENST00000513346 EPB41P11171 864 aaKnown RBP12.31□□□□□ -0.44
TCOF1-211ENST00000513346 MYO1EQ12965 1108 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 PTGDRQ13258 359 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 BEND6Q5SZJ8 279 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-211ENST00000513346 ZNF658Q5TYW1 1059 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-211ENST00000513346 CAPRIN2Q6IMN6 1127 aaKnown RBP12.31□□□□□ -0.44
TCOF1-211ENST00000513346 RBM43Q6ZSC3 357 aaKnown RBP12.31□□□□□ -0.44
TCOF1-211ENST00000513346 REXO1L1PQ8IX06 675 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 HVCN1Q96D96 273 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 LSM14BQ9BX40 385 aaKnown RBP12.31□□□□□ -0.44
TCOF1-211ENST00000513346 PKD2L1Q9P0L9 805 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 PLAAQ9Y263 795 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 IGKV5-2P06315 115 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 PLCB3Q01970 1234 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 CCDC110Q8TBZ0 833 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 IMPG2Q9BZV3 1241 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 YIPF3Q9GZM5 350 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 GLT8D2Q9H1C3 349 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 BATF3Q9NR55 127 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 INO80Q9ULG1 1556 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-211ENST00000513346 ATP2B4P23634 1241 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 POLE2P56282 527 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 SESN3P58005 492 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 CHRNDQ07001 517 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms