RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 EVCP57679 992 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 RPS6P62753 249 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 RABEP1Q15276 862 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 OLFML2BQ68BL8 750 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 PHKBQ93100 1093 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 TBC1D32Q96NH3 1257 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 PURBQ96QR8 312 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 ALDH8A1Q9H2A2 487 aaPredicted RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 CNPY2Q9Y2B0 182 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 DIS3Q9Y2L1 958 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 DNAJC25-GNG10A0A024R161 153 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 GCOM1H8Y6P7 765 aaPredicted RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 POLR2MP0CAP2 368 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 CACNB2Q08289 660 aaPredicted RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 SSRP1Q08945 709 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 PRAMEF19Q5SWL8 479 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 TRIM22Q8IYM9 498 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 TBC1D5Q92609 795 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 CUL5Q93034 780 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 MPHOSPH6Q99547 160 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 TINF2Q9BSI4 451 aa13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 HMX1Q9NP08 348 aaPredicted RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 ADD3Q9UEY8 706 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 ZHX1Q9UKY1 873 aaPredicted RBP13.18□□□□□ -0.3
LIMCH1-210ENST00000509454 NID2Q14112 1375 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 SOWAHBA6NEL2 793 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 ASB14A6NK59 587 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 ST18O60284 1047 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 PFKFB2O60825 505 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 CDKL5O76039 1030 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 HOXA13P31271 388 aaPredicted RBP13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 NAPAP54920 295 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 ARMCX2Q7L311 632 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 FCHSD1Q86WN1 690 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 NECAB1Q8N987 351 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 FAM133AQ8N9E0 248 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 RGS22Q8NE09 1264 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 SMARCC2Q8TAQ2 1214 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 KIF2CQ99661 725 aa13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 RBM27Q9P2N5 1060 aaKnown RBP13.17□□□□□ -0.3
LIMCH1-210ENST00000509454 RBBP6Q7Z6E9 1792 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 RPTORQ8N122 1335 aa13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 CCND3P30281 292 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 FUT2Q10981 343 aa13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 SCRN1Q12765 414 aa13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 ARHGEF16Q5VV41 709 aa13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 WWC2Q6AWC2 1192 aa13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 ZNF467Q7Z7K2 595 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 SYTL5Q8TDW5 730 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 LIMCH1Q9UPQ0 1083 aa13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 DDX49Q9Y6V7 483 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-210ENST00000509454 B4DLN1 442 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 PRPF3O43395 683 aaKnown RBP13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 LARGE1O95461 756 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 SCG2P13521 617 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 IFNAR1P17181 557 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 ALDH5A1P51649 535 aaPredicted RBP13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 MRPL12P52815 198 aaKnown RBP13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 PDE4DQ08499 809 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 ME3Q16798 604 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 EEPD1Q7L9B9 569 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 MSL3Q8N5Y2 521 aaKnown RBP13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 DEFB118Q96PH6 123 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 TAAR1Q96RJ0 339 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 RMDN3Q96TC7 470 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 PSTPIP2Q9H939 334 aa13.15□□□□□ -0.3
LIMCH1-210ENST00000509454 SYNGAP1Q96PV0 1343 aa13.15□□□□□ -0.31
LIMCH1-210ENST00000509454 OPLAHO14841 1288 aa13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 TFRCP02786 760 aaKnown RBP13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 CYBAP13498 195 aa13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 EIF2AK2P19525 551 aaKnown RBP13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 ADCY7P51828 1080 aa13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 PFKFB3Q16875 520 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 MAP3K21Q5TCX8 1036 aa13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 NSUN6Q8TEA1 469 aaKnown RBP13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 FGD4Q96M96 766 aa13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 RNF26Q9BY78 433 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 MCM3APO60318 1980 aa13.14□□□□□ -0.31
LIMCH1-210ENST00000509454 hCG_1984214I3L0E3 225 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 STXBP3O00186 592 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 DTNBO60941 627 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 HSD17B4P51659 736 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 NTRK3Q16288 839 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 UBE2SQ16763 222 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 ANO1Q5XXA6 986 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 PPP1R18Q6NYC8 613 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 USP17L6PQ6QN14 398 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 MAMDC4Q6UXC1 1216 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 CCDC83Q8IWF9 413 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 SAMD3Q8N6K7 520 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 ZNF713Q8N859 430 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 TRPV1Q8NER1 839 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 DNERQ8NFT8 737 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 CCDC12Q8WUD4 166 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 GTF3C6Q969F1 213 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 ZSCAN31Q96LW9 406 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 BARHL2Q9NY43 387 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms