RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 FBXL7Q9UJT9 491 aa5.5□□□□□ -1.53
USP53-204ENST00000507906 KCNH3Q9ULD8 1083 aa5.5□□□□□ -1.53
USP53-204ENST00000507906 COQ6Q9Y2Z9 468 aa5.5□□□□□ -1.53
USP53-204ENST00000507906 BACE2Q9Y5Z0 518 aa5.5□□□□□ -1.53
USP53-204ENST00000507906 WDR64B1ANS9 1081 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 ARVCFO00192 962 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 CBX4O00257 560 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 IGF2BP3O00425 579 aaKnown RBP eCLIP5.49□□□□□ -1.53
USP53-204ENST00000507906 SRGAP2CP0DJJ0 459 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 CEBPAP49715 358 aaPredicted RBP5.49□□□□□ -1.53
USP53-204ENST00000507906 OXCT1P55809 520 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 GPR85P60893 370 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 ACBD5Q5T8D3 534 aaPredicted RBP5.49□□□□□ -1.53
USP53-204ENST00000507906 CCDC181Q5TID7 509 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 ZPBP2Q6X784 338 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 LBX2Q6XYB7 198 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 ZNF655Q8N720 491 aaPredicted RBP5.49□□□□□ -1.53
USP53-204ENST00000507906 ENOX1Q8TC92 643 aaKnown RBP5.49□□□□□ -1.53
USP53-204ENST00000507906 PI4K2BQ8TCG2 481 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 WNK4Q96J92 1243 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 CDIP1Q9H305 208 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 VTA1Q9NP79 307 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 PLAGL2Q9UPG8 496 aa5.49□□□□□ -1.53
USP53-204ENST00000507906 SCO2A0A1W2PP80 73 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 SHTN1A0MZ66 631 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 AQP7O14520 342 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 DHX15O43143 795 aaKnown RBP5.48□□□□□ -1.53
USP53-204ENST00000507906 ZNF205O95201 554 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 GSTM1P09488 218 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 YBX3P16989 372 aaKnown RBP eCLIP5.48□□□□□ -1.53
USP53-204ENST00000507906 BMP8BP34820 402 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 LTBRP36941 435 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 ADCYAP1R1P41586 468 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 GATA4P43694 442 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 RAB27AP51159 221 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 TMPRSS15P98073 1019 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 DSG1Q02413 1049 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 GAB4Q2WGN9 574 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 ZMYM1Q5SVZ6 1142 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 CDKAL1Q5VV42 579 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 RNF219Q5W0B1 726 aaPredicted RBP5.48□□□□□ -1.53
USP53-204ENST00000507906 WWC2Q6AWC2 1192 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 MFSD4AQ8N468 514 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 FBXL6Q8N531 539 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 PIWIL2Q8TC59 973 aaKnown RBP5.48□□□□□ -1.53
USP53-204ENST00000507906 MFSD14AQ96MC6 490 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 NACC1Q96RE7 527 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 ORAI3Q9BRQ5 295 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 GPR27Q9NS67 375 aa5.48□□□□□ -1.53
USP53-204ENST00000507906 GABRDO14764 452 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 MEFVO15553 781 aaPredicted RBP5.47□□□□□ -1.53
USP53-204ENST00000507906 TSPAN6O43657 245 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 PRKD3O94806 890 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 F2P00734 622 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 F13BP05160 661 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 SYPP08247 313 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 MECP2P51608 486 aaKnown RBP5.47□□□□□ -1.53
USP53-204ENST00000507906 ITKQ08881 620 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 CLEC16AQ2KHT3 1053 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 CWF19L1Q69YN2 538 aaKnown RBP5.47□□□□□ -1.53
USP53-204ENST00000507906 RCSD1Q6JBY9 416 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 UBE2R2Q712K3 238 aaPredicted RBP5.47□□□□□ -1.53
USP53-204ENST00000507906 OVCH1Q7RTY7 1134 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 MTDHQ86UE4 582 aaKnown RBP5.47□□□□□ -1.53
USP53-204ENST00000507906 TSPYL5Q86VY4 417 aaPredicted RBP5.47□□□□□ -1.53
USP53-204ENST00000507906 CPNE8Q86YQ8 564 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 IFNL3Q8IZI9 196 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 CNTD1Q8N815 330 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 SMC1BQ8NDV3 1235 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 TMEM52Q8NDY8 209 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 DPF3Q92784 378 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 MTMR8Q96EF0 704 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 COX4I2Q96KJ9 171 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 HSPA12BQ96MM6 686 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 SMAD5Q99717 465 aaKnown RBP5.47□□□□□ -1.53
USP53-204ENST00000507906 YIPF4Q9BSR8 244 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 FOXP3Q9BZS1 431 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 ASCC2Q9H1I8 757 aaPredicted RBP5.47□□□□□ -1.53
USP53-204ENST00000507906 IFT22Q9H7X7 185 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 AP5S1Q9NUS5 200 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 H2AFY2Q9P0M6 372 aaPredicted RBP5.47□□□□□ -1.53
USP53-204ENST00000507906 GTF2IRD1Q9UHL9 959 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 RNF112Q9ULX5 631 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 TNKSO95271 1327 aa5.47□□□□□ -1.53
USP53-204ENST00000507906 TMEM82A0PJX8 343 aa5.46□□□□□ -1.54
USP53-204ENST00000507906 AKAP10O43572 662 aa5.46□□□□□ -1.54
USP53-204ENST00000507906 BRINP1O60477 761 aa5.46□□□□□ -1.54
USP53-204ENST00000507906 PPP1R11O60927 126 aaPredicted RBP5.46□□□□□ -1.54
USP53-204ENST00000507906 FKTNO75072 461 aa5.46□□□□□ -1.54
USP53-204ENST00000507906 ATP2A2P16615 1042 aaKnown RBP5.46□□□□□ -1.54
USP53-204ENST00000507906 SEPHS1P49903 392 aa5.46□□□□□ -1.54
USP53-204ENST00000507906 CREB3L3Q68CJ9 461 aa5.46□□□□□ -1.54
USP53-204ENST00000507906 RSPO2Q6UXX9 243 aaPredicted RBP5.46□□□□□ -1.54
USP53-204ENST00000507906 NECAB2Q7Z6G3 386 aa5.46□□□□□ -1.54
USP53-204ENST00000507906 ZC3H7AQ8IWR0 971 aaKnown RBP5.46□□□□□ -1.54
USP53-204ENST00000507906 SPACA3Q8IXA5 215 aa5.46□□□□□ -1.54
USP53-204ENST00000507906 CBARPQ8N350 705 aaPredicted RBP5.46□□□□□ -1.54
USP53-204ENST00000507906 LINC00116Q8NCU8 138 aa5.46□□□□□ -1.54
USP53-204ENST00000507906 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.46□□□□□ -1.54
USP53-204ENST00000507906 DIO2Q92813 273 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms