RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 GRK4P32298 578 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 SLC16A2P36021 539 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 FLT3LGP49771 235 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 RNF207Q6ZRF8 634 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 CPXCR1Q8N123 301 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 DAGLBQ8NCG7 672 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 NSUN6Q8TEA1 469 aaKnown RBP9.74□□□□□ -0.85
PDGFC-205ENST00000506880 CLEC4DQ8WXI8 215 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 NAP1L4Q99733 375 aaKnown RBP9.74□□□□□ -0.85
PDGFC-205ENST00000506880 SEZ6LQ9BYH1 1024 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 UBA5Q9GZZ9 404 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 ABHD16BQ9H3Z7 469 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 C6orf50Q9HD87 102 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 RIC8AQ9NPQ8 531 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 A1CFQ9NQ94 594 aaKnown RBP9.74□□□□□ -0.85
PDGFC-205ENST00000506880 TPCN1Q9ULQ1 816 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 NKRFO15226 690 aaKnown RBP eCLIP9.73□□□□□ -0.85
PDGFC-205ENST00000506880 ADCY3O60266 1144 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 PDCP20941 246 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 EDNRBP24530 442 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 CDC27P30260 824 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 ADD1P35611 737 aaKnown RBP9.73□□□□□ -0.85
PDGFC-205ENST00000506880 SLC9C1Q4G0N8 1177 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 MAP3K21Q5TCX8 1036 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 MAML3Q96JK9 1138 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 CDHR1Q96JP9 859 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 AGBL1Q96MI9 1066 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 TCEANC2Q96MN5 208 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 PIGSQ96S52 555 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 PSTPIP2Q9H939 334 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 BRMS1Q9HCU9 246 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 VTA1Q9NP79 307 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 GPHNQ9NQX3 736 aaPredicted RBP9.73□□□□□ -0.85
PDGFC-205ENST00000506880 MTMR7Q9Y216 660 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 Q9Y3F1 56 aa9.73□□□□□ -0.85
PDGFC-205ENST00000506880 LCTP09848 1927 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 MCM3APO60318 1980 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 PLEKHA8P1O95397 391 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 CPA1P15085 419 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 RPS6P62753 249 aaKnown RBP9.72□□□□□ -0.85
PDGFC-205ENST00000506880 NKX3-2P78367 333 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 PRKCZQ05513 592 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 SCRN1Q12765 414 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 ORC2Q13416 577 aaPredicted RBP9.72□□□□□ -0.85
PDGFC-205ENST00000506880 ME3Q16798 604 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 WDR78Q5VTH9 848 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 CCDC174Q6PII3 467 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 MOXD1Q6UVY6 613 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 SMARCC2Q8TAQ2 1214 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 TINF2Q9BSI4 451 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 MYL10Q9BUA6 226 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 NAP1L2Q9ULW6 460 aaPredicted RBP9.72□□□□□ -0.85
PDGFC-205ENST00000506880 CNPY2Q9Y2B0 182 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 RIPK3Q9Y572 518 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 V9GY48 417 aaPredicted RBP9.72□□□□□ -0.85
PDGFC-205ENST00000506880 RPTORQ8N122 1335 aa9.72□□□□□ -0.85
PDGFC-205ENST00000506880 LRRC37A2A6NM11 1700 aa9.71□□□□□ -0.85
PDGFC-205ENST00000506880 HTTP42858 3142 aa9.71□□□□□ -0.85
PDGFC-205ENST00000506880 SPDYE3A6NKU9 549 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 STXBP3O00186 592 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 EIF3JO75822 258 aaKnown RBP9.71□□□□□ -0.86
PDGFC-205ENST00000506880 ADCY7P51828 1080 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 NAPAP54920 295 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 CUL4AQ13619 759 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 TRIM29Q14134 588 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 GNPTABQ3T906 1256 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 IQSEC1Q6DN90 963 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 NIPA1Q7RTP0 329 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 HOMER1Q86YM7 354 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 ANKLE1Q8NAG6 615 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 GIMAP8Q8ND71 665 aaPredicted RBP9.71□□□□□ -0.86
PDGFC-205ENST00000506880 NSUN7Q8NE18 718 aaKnown RBP9.71□□□□□ -0.86
PDGFC-205ENST00000506880 ZNF333Q96JL9 665 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 VAT1LQ9HCJ6 419 aa9.71□□□□□ -0.86
PDGFC-205ENST00000506880 HMX1Q9NP08 348 aaPredicted RBP9.71□□□□□ -0.86
PDGFC-205ENST00000506880 RBM47A0AV96 593 aaKnown RBP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 PTPDC1A2A3K4 754 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 K7ELQ4 463 aaPredicted RBP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 NFIBO00712 420 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 SEPT4O43236 478 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 PPP1R11O60927 126 aaPredicted RBP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 CTGFP29279 349 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 CLK2P49760 499 aaKnown RBP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 ALDH5A1P51649 535 aaPredicted RBP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 USP11P51784 963 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 CCT2P78371 535 aaKnown RBP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 BAATQ14032 418 aaPredicted RBP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 COL9A3Q14050 684 aaPredicted RBP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 BECN1Q14457 450 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 SAFBQ15424 915 aaKnown RBP eCLIP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 STXBP2Q15833 593 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 PKN1Q16512 942 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 SLC35G1Q2M3R5 365 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 USH1GQ495M9 461 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 PCNX4Q63HM2 1172 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 NSMFQ6X4W1 530 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 HEATR3Q7Z4Q2 680 aa9.7□□□□□ -0.86
PDGFC-205ENST00000506880 REXO1Q8N1G1 1221 aaKnown RBP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 SYTL5Q8TDW5 730 aaPredicted RBP9.7□□□□□ -0.86
PDGFC-205ENST00000506880 TMX3Q96JJ7 454 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms