RNA–Protein interactions for RNA: ENST00000498810.1

CDK11A-222, Transcript of cyclin dependent kinase 11A, human

TSL 2

Gene CDK11A, Length 574 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK11A-222	ENST00000498810	NPLOC4	Q8TAT6	608 aa		12.53	□□□□□ -0.4
CDK11A-222	ENST00000498810	DCAF4	Q8WV16	495 aa		12.53	□□□□□ -0.4
CDK11A-222	ENST00000498810	USP6NL	Q92738	828 aa		12.53	□□□□□ -0.4
CDK11A-222	ENST00000498810	GMCL1	Q96IK5	515 aa		12.53	□□□□□ -0.4
CDK11A-222	ENST00000498810	UBAC1	Q9BSL1	405 aa		12.53	□□□□□ -0.4
CDK11A-222	ENST00000498810	CNNM2	Q9H8M5	875 aa		12.53	□□□□□ -0.4
CDK11A-222	ENST00000498810	RAVER2	Q9HCJ3	691 aa	Known RBP	12.53	□□□□□ -0.4
CDK11A-222	ENST00000498810	FAM217B	Q9NTX9	383 aa	Predicted RBP	12.53	□□□□□ -0.4
CDK11A-222	ENST00000498810	BRCA2	P51587	3418 aa		12.52	□□□□□ -0.4
CDK11A-222	ENST00000498810	MSC	O60682	206 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	KDM4A	O75164	1064 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	FDX1	P10109	184 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	CCND3	P30281	292 aa	Predicted RBP	12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	CYP2C19	P33261	490 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	CCDC178	Q5BJE1	867 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	PLA2G2C	Q5R387	149 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	CCDC174	Q6PII3	467 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	KIAA1211	Q6ZU35	1233 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	NECAB2	Q7Z6G3	386 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	ANKRD35	Q8N283	1001 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	CCDC136	Q96JN2	1154 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	ZKSCAN3	Q9BRR0	538 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	KRT23	Q9C075	422 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	FBXO40	Q9UH90	709 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	ZNF214	Q9UL59	606 aa	Predicted RBP	12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	FRMPD2	Q68DX3	1309 aa	Predicted RBP	12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810	ALPK3	Q96L96	1907 aa		12.52	□□□□□ -0.41
CDK11A-222	ENST00000498810		B4E1Z4	1266 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	PGK2	P07205	417 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	HOXC6	P09630	235 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	NT5C2	P49902	561 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	MAP3K21	Q5TCX8	1036 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	OLFML2B	Q68BL8	750 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	RCSD1	Q6JBY9	416 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	CASC1	Q6TDU7	716 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	RALYL	Q86SE5	291 aa	Known RBP	12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	PAWR	Q96IZ0	340 aa	Known RBP	12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	REPIN1	Q9BWE0	567 aa	Known RBP	12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	KAT14	Q9H8E8	782 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	SLC38A10	Q9HBR0	1119 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	IL17RB	Q9NRM6	502 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	FLRT1	Q9NZU1	646 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	ADAMTS5	Q9UNA0	930 aa		12.51	□□□□□ -0.41
CDK11A-222	ENST00000498810	DHX16	O60231	1041 aa	Known RBP	12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	ALAS1	P13196	640 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	CHML	P26374	656 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	OAZ1	P54368	228 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	TRIM67	Q6ZTA4	783 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	RASGRP2	Q7LDG7	609 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	KRI1	Q8N9T8	703 aa	Known RBP	12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	CHST13	Q8NET6	341 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	REPS2	Q8NFH8	660 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	MAML3	Q96JK9	1138 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	TMEM47	Q9BQJ4	181 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	C11orf49	Q9H6J7	331 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	ACAD9	Q9H845	621 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	TCP11L1	Q9NUJ3	509 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	DDX20	Q9UHI6	824 aa	Known RBP	12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	CCPG1	Q9ULG6	757 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	CNPY2	Q9Y2B0	182 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	NR2E3	Q9Y5X4	410 aa		12.5	□□□□□ -0.41
CDK11A-222	ENST00000498810	TNKS	O95271	1327 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	ERICH2	A1L162	156 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	KBTBD13	C9JR72	458 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	LCE2B	O14633	110 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	COBL	O75128	1261 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	FGR	P09769	529 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	USP46	P62068	366 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	SYDE2	Q5VT97	1194 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	RNF19B	Q6ZMZ0	732 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	ZNF598	Q86UK7	904 aa	Known RBP	12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	DIS3L	Q8TF46	1054 aa	Known RBP	12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	RNF146	Q9NTX7	359 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	PRR12	Q9ULL5	1215 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	TACC3	Q9Y6A5	838 aa		12.49	□□□□□ -0.41
CDK11A-222	ENST00000498810	PFAS	O15067	1338 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	ATP2A1	O14983	1001 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	CYBA	P13498	195 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	SLC16A2	P36021	539 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	SNAP25	P60880	206 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	SART3	Q15020	963 aa	Known RBP	12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	TKFC	Q3LXA3	575 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	IFIT1B	Q5T764	474 aa	Known RBP	12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	ANO1	Q5XXA6	986 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	PNMA1	Q8ND90	353 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	TTC14	Q96N46	770 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	ZHX1	Q9UKY1	873 aa	Predicted RBP	12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	OGDHL	Q9ULD0	1010 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	RIPK3	Q9Y572	518 aa		12.48	□□□□□ -0.41
CDK11A-222	ENST00000498810	SMCHD1	A6NHR9	2005 aa		12.47	□□□□□ -0.41
CDK11A-222	ENST00000498810	RARB	P10826	455 aa		12.47	□□□□□ -0.41
CDK11A-222	ENST00000498810	PDHB	P11177	359 aa		12.47	□□□□□ -0.41
CDK11A-222	ENST00000498810	MSS51	Q4VC12	460 aa		12.47	□□□□□ -0.41
CDK11A-222	ENST00000498810	GPATCH4	Q5T3I0	446 aa	Known RBP	12.47	□□□□□ -0.41
CDK11A-222	ENST00000498810	NSMF	Q6X4W1	530 aa		12.47	□□□□□ -0.41
CDK11A-222	ENST00000498810	DGKH	Q86XP1	1220 aa		12.47	□□□□□ -0.41
CDK11A-222	ENST00000498810	C7orf61	Q8IZ16	206 aa		12.47	□□□□□ -0.41
CDK11A-222	ENST00000498810	AGBL1	Q96MI9	1066 aa		12.47	□□□□□ -0.41
CDK11A-222	ENST00000498810	TRERF1	Q96PN7	1200 aa		12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms