RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 TPM4P67936 248 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 KLRC3Q07444 240 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 CKAP2LQ8IYA6 745 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 REXO1Q8N1G1 1221 aaKnown RBP11.65□□□□□ -0.54
HDAC3-214ENST00000495485 FAM200AQ8TCP9 573 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 CNKSR2Q8WXI2 1034 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 CUL5Q93034 780 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 FUCA2Q9BTY2 467 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 GOLPH3LQ9H4A5 285 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 VCPKMTQ9H867 229 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 RNF186Q9NXI6 227 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 KCNH3Q9ULD8 1083 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 PCDHA6Q9UN73 950 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 HPSEQ9Y251 543 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 PCDHA8Q9Y5H6 950 aa11.65□□□□□ -0.54
HDAC3-214ENST00000495485 USP17L15C9J2P7 530 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 BTBD19C9JJ37 291 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 USP17L13C9JLJ4 530 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 USP17L11C9JVI0 530 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 USP17L18D6R9N7 530 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 USP17L22D6RA61 530 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 USP17L17D6RBQ6 530 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 USP17L19D6RCP7 530 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 USP17L20D6RJB6 530 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 GOLGA6L19H0YKK7 550 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 WDR46O15213 610 aaKnown RBP11.64□□□□□ -0.55
HDAC3-214ENST00000495485 FDX1P10109 184 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 PRPHP41219 470 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 HMGCS2P54868 508 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 ATP2C1P98194 919 aaPredicted RBP11.64□□□□□ -0.55
HDAC3-214ENST00000495485 USP17L24Q0WX57 530 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 MTMR2Q13614 643 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 MOGSQ13724 837 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 TAF1CQ15572 869 aaPredicted RBP11.64□□□□□ -0.55
HDAC3-214ENST00000495485 ZNF174Q15697 407 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 NPY5RQ15761 445 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 NEK8Q86SG6 692 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 FAM160B2Q86V87 743 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 CEP57L1Q8IYX8 460 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 CNNM3Q8NE01 707 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 MTMR8Q96EF0 704 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 AMNQ9BXJ7 453 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 JMJD4Q9H9V9 463 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 RIC8AQ9NPQ8 531 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 PRDM10Q9NQV6 1147 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 KIAA1468Q9P260 1216 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 FBXO2Q9UK22 296 aaPredicted RBP11.64□□□□□ -0.55
HDAC3-214ENST00000495485 PNMA2Q9UL42 364 aa11.64□□□□□ -0.55
HDAC3-214ENST00000495485 M0R2N6 131 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 PDHXO00330 501 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 IGF2BP3O00425 579 aaKnown RBP eCLIP11.63□□□□□ -0.55
HDAC3-214ENST00000495485 TLR2O60603 784 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 PLA2G6O60733 806 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 SMC2O95347 1197 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 GNRH1P01148 92 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 HSPA1AP0DMV8 641 aaKnown RBP11.63□□□□□ -0.55
HDAC3-214ENST00000495485 HSPA1BP0DMV9 641 aaKnown RBP11.63□□□□□ -0.55
HDAC3-214ENST00000495485 MCM7P33993 719 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 IRX3P78415 501 aaPredicted RBP11.63□□□□□ -0.55
HDAC3-214ENST00000495485 MKRN3Q13064 507 aaKnown RBP11.63□□□□□ -0.55
HDAC3-214ENST00000495485 PTGDRQ13258 359 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 SHC4Q6S5L8 630 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 BTNL9Q6UXG8 535 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 LBX2Q6XYB7 198 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 DTHD1Q6ZMT9 781 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 KRBA2Q6ZNG9 492 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 GADL1Q6ZQY3 521 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 KCTD1Q719H9 257 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 MB21D1Q8N884 522 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 ZIC5Q96T25 663 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 PTPN18Q99952 460 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 RAB34Q9BZG1 259 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 HOXC10Q9NYD6 342 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 DACH1Q9UI36 760 aa11.63□□□□□ -0.55
HDAC3-214ENST00000495485 CASP8AP2Q9UKL3 1982 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 SMTNL1A8MU46 457 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 BECN2A8MW95 431 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 TMEM232C9JQI7 657 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 TRPA1O75762 1119 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 FOSP01100 380 aaPredicted RBP11.62□□□□□ -0.55
HDAC3-214ENST00000495485 SLURP2P0DP57 97 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 GCFC2P16383 781 aaKnown RBP11.62□□□□□ -0.55
HDAC3-214ENST00000495485 ZNF165P49910 485 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 STAT2P52630 851 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 JAG1P78504 1218 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 TMEM266Q2M3C6 531 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 SYDE2Q5VT97 1194 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 GPAT2Q6NUI2 795 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 FBXO11Q86XK2 927 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 RNF214Q8ND24 703 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 AK8Q96MA6 479 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 CLIC6Q96NY7 704 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 PPP1R9BQ96SB3 815 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 CSRNP2Q9H175 543 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 PSTPIP2Q9H939 334 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 EHMT1Q9H9B1 1298 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 EMILIN3Q9NT22 766 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 CCDC39Q9UFE4 941 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 PCDHA1Q9Y5I3 950 aa11.62□□□□□ -0.55
HDAC3-214ENST00000495485 PARP14Q460N5 1801 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms