RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ZNF287Q9HBT7 754 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 CDC23Q9UJX2 597 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 PCDHAC2Q9Y5I4 1007 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 POLRMTO00411 1230 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 PDHBP11177 359 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 SLC16A2P36021 539 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 DNA2P51530 1060 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 CACNB3P54284 484 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 TTBK2Q6IQ55 1244 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 C15orf52Q6ZUT6 534 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 POLD4Q9HCU8 107 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 KCNQ5Q9NR82 932 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 RMND1Q9NWS8 449 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 C6orf50Q9HD87 102 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 DUSP10Q9Y6W6 482 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 GOLGA6L9A6NEM1 432 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 ZNF185O15231 689 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 TDP2O95551 362 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 CYP27A1Q02318 531 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 UBE2SQ16763 222 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 NEK8Q86SG6 692 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 ABHD10Q9NUJ1 306 aa18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 TTF2Q9UNY4 1162 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-210ENST00000494566 UBR3Q6ZT12 1888 aa18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 PPEF1O14829 653 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 MATR3P43243 847 aaKnown RBP eCLIP18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 ASIC1P78348 528 aa18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 STK4Q13043 487 aa18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 CT47A1Q5JQC4 288 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 KBTBD4Q9NVX7 518 aa18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 MPHOSPH10O00566 681 aaKnown RBP18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 SLC37A4O43826 429 aa18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 BBOX1O75936 387 aa18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 TPM1P09493 284 aa18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 PDE4DQ08499 809 aa18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 TAF3Q5VWG9 929 aa18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 REXO1Q8N1G1 1221 aaKnown RBP18.49■□□□□ 0.55
CCDC88B-210ENST00000494566 MACROD2A1Z1Q3 448 aa18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 PYM1Q9BRP8 204 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 ZNF219Q9P2Y4 722 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 GAKO14976 1311 aa18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 POTEMA6NI47 508 aa18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 PLCG2P16885 1265 aa18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 BEND6Q5SZJ8 279 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 TMED8Q6PL24 325 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 KRT25Q7Z3Z0 450 aa18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 CNGA4Q8IV77 575 aa18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 SMCR8Q8TEV9 937 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 MMTAG2Q9BU76 263 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 MTMR4Q9NYA4 1195 aa18.48■□□□□ 0.55
CCDC88B-210ENST00000494566 ADAMTSL1Q8N6G6 1762 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 CTAGE15A4D2H0 777 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 LRRIQ3A6PVS8 624 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 B4DLN1 442 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 CTAGE8P0CG41 777 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 ADRA2BP18089 450 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 NFIAQ12857 509 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 KCTD1Q719H9 257 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 DYMQ7RTS9 669 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 CTAGE6Q86UF2 777 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 ZFPM1Q8IX07 1006 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 CTAGE4Q8IX94 777 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 NAPGQ99747 312 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 CCSER1Q9C0I3 900 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 SMARCAL1Q9NZC9 954 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 TTC26A0AVF1 554 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 TUBB4AP04350 444 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 GNA11P29992 359 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 GPS2Q13227 327 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 ANKRD20A12PQ8NF67 263 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 LZTS2Q9BRK4 669 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 TRIM9Q9C026 710 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 USP40Q9NVE5 1235 aa18.47■□□□□ 0.55
CCDC88B-210ENST00000494566 LRRC10BA6NIK2 292 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 TNNI2P48788 182 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 GALNT17Q6IS24 598 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 PROM2Q8N271 834 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 NUDT12Q9BQG2 462 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 SLC39A2Q9NP94 309 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 EDIL3O43854 480 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 ATP1A1P05023 1023 aaKnown RBP18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 TCP10Q12799 353 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 TTC19Q6DKK2 380 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 AGPAT5Q9NUQ2 364 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 RHOBTB3O94955 611 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 CASP8Q14790 479 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 ANKRD40Q6AI12 368 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 CSGALNACT2Q8N6G5 542 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 GIMAP8Q8ND71 665 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 TBC1D22AQ8WUA7 517 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 DUSP9Q99956 384 aaKnown RBP18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 ZC3H12CQ9C0D7 883 aaKnown RBP18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 DBNDD1Q9H9R9 158 aa18.46■□□□□ 0.55
CCDC88B-210ENST00000494566 CCDC151A5D8V7 595 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 H7C1D1 291 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 PSMA7O14818 248 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 PPP1R11O60927 126 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 ARHGAP25P42331 645 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 SPATA31A6Q5VVP1 1343 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms